FiT-DB / Search/ Help/ Sample detail

Os08g0556300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.0565) R2 : 0.334
β1 : -0.897 (0.23) R2dD : 0.0321 R2D : -0.0191
β2 : 1.57 (0.168) R2dC : 0.212 R2C : 0.0536
β3 : 1.01 (0.151) R2dE : 0.108 R2E : -0.0698
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.3 (0.581) R2dD*E : 0.118 R2D*E : 0.103
γ1 : 0.542 (0.125) R2dN8 : 0.0417 R2N8 : 0.0813
σ : 1.03
deviance : 485.49
__
_____
C
peak time of C : 1.2
E
wheather : temperature
threshold : 20.2
memory length : 705
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.03
open length of G : 4.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
476.43 1.03 6.37 -0.818 1.53 0.97 1.67 -3.82 0.561 1.23 20.21 715 2.95 4.02
510 1.05 6.3 0.0737 1.64 1.1 3.31 -- 0.832 0.356 19.12 596 3.08 3.43
485.49 1.03 6.4 -0.897 1.57 1.01 -- -4.3 0.542 1.2 20.2 705 3.03 4.33
550.26 1.09 6.3 -0.108 1.67 1.03 -- -- 0.787 0.774 19.2 602 3.52 3.27
589.62 1.13 6.42 -1.19 -- 0.483 -- -4.21 0.509 -- 21.11 2018 3.39 4.72
559.6 1.11 6.24 0.139 1.1 -- 2.39 -- 0.968 2.27 -- -- -- --
576.84 1.12 6.24 0.0692 1.16 -- -- -- 0.951 3.15 -- -- -- --
615.36 1.16 6.27 -0.144 -- 1.11 -- -- 0.767 -- 19 1621 3.42 3.31
550 1.09 6.3 -- 1.57 0.96 -- -- 0.806 0.823 19.3 591 3.4 3.33
652.92 1.19 6.24 0.118 -- -- -- -- 0.981 -- -- -- -- --
576.97 1.12 6.24 -- 1.16 -- -- -- 0.943 3.15 -- -- -- --
611.61 1.15 6.29 -- -- 1.15 -- -- 0.761 -- 18.83 1685 2.98 2.93
653.29 1.19 6.24 -- -- -- -- -- 0.968 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 477.90 temperature 20 720 > th dose independent rect. 3 4
6 482.51 wind 5 4320 > th dose independent rect. 24 1
11 484.34 wind 5 4320 < th dose independent rect. 24 1
12 486.57 temperature 20 720 > th dose independent rect. 3 1
13 486.78 temperature 20 720 > th dose independent rect. 5 1
18 488.57 wind 3 4320 > th dose dependent rect. 24 1
22 490.97 temperature 20 720 > th dose dependent rect. 2 8
23 491.25 temperature 20 720 > th dose dependent rect. 3 5
38 493.94 wind 9 4320 < th dose independent rect. 17 5
41 494.58 wind 7 4320 > th dose dependent rect. 15 18
43 494.92 wind 9 4320 < th dose independent rect. 17 11
47 495.20 wind 9 4320 < th dose independent rect. 17 9
50 495.28 wind 9 4320 < th dose independent rect. 17 13
60 495.59 wind 7 4320 > th dose independent rect. 15 18
66 495.98 wind 9 4320 > th dose independent rect. 17 6
68 496.03 wind 7 4320 < th dose independent rect. 15 18
69 496.13 wind 9 4320 > th dose independent rect. 17 9
80 496.50 temperature 25 720 < th dose independent rect. 9 2
81 496.50 wind 9 4320 < th dose independent rect. 17 17
101 496.93 wind 9 4320 > th dose independent rect. 15 11
104 496.97 wind 9 4320 > th dose dependent rect. 17 6
110 497.13 wind 9 4320 < th dose independent rect. 15 15
111 497.15 wind 9 4320 > th dose independent rect. 15 8
113 497.22 wind 9 4320 > th dose dependent rect. 17 9
120 497.33 temperature 20 1440 < th dose independent rect. 1 5
140 497.60 wind 9 4320 > th dose dependent rect. 17 17
150 497.65 wind 7 4320 > th dose dependent sin 12 NA
156 497.73 wind 9 4320 > th dose independent rect. 15 5
179 498.29 temperature 20 1440 < th dose independent rect. 21 9
210 498.65 wind 7 4320 > th dose independent sin 12 NA
211 498.65 temperature 20 1440 < th dose independent rect. 3 1
226 498.90 temperature 20 720 > th dose independent sin 8 NA
233 499.05 wind 7 4320 < th dose independent sin 12 NA
241 499.17 wind 9 4320 > th dose dependent rect. 15 5
286 499.77 wind 7 4320 > th dose dependent rect. 18 3
292 499.85 wind 5 4320 < th dose independent rect. 24 5
294 499.87 wind 9 4320 < th dose independent rect. 17 1
298 499.92 wind 7 4320 > th dose independent rect. 3 4
308 499.99 wind 5 4320 > th dose independent rect. 24 5
318 500.09 wind 7 4320 < th dose independent rect. 3 4
325 500.16 wind 7 4320 > th dose dependent rect. 3 5
333 500.25 temperature 20 720 > th dose dependent sin 8 NA
339 500.30 wind 7 4320 < th dose independent rect. 3 1
353 500.47 wind 9 4320 > th dose dependent rect. 17 1
356 500.51 wind 7 4320 > th dose independent rect. 24 7
397 500.74 wind 7 4320 > th dose dependent rect. 24 8
451 501.21 wind 9 4320 > th dose independent rect. 17 1
590 502.20 wind 9 4320 > th dose independent rect. 22 4
602 502.24 wind 9 4320 > th dose dependent rect. 22 4
606 502.27 wind 7 4320 > th dose dependent rect. 7 1
703 502.81 temperature 20 1440 < th dose independent rect. 5 1
713 502.89 temperature 10 720 > th dose dependent rect. 2 9
801 503.72 temperature 15 720 > th dose dependent rect. 3 1
806 503.76 wind 9 43200 < th dose independent rect. 16 1
900 504.47 wind 9 4320 > th dose independent rect. 19 1
901 504.47 wind 9 4320 > th dose dependent rect. 19 1
984 505.17 temperature 20 270 > th dose dependent sin 5 NA