BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0556300 Os08g0556300|AK105201
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39670.1  | chr4:18410172-18410861 FORWARD LENGTH=230           65   2e-11

>AT4G39670.1 | chr4:18410172-18410861 FORWARD LENGTH=230
          Length = 229

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 1   MDSAEELVDRDVAAGRVRATGTHSNNLVRVKRGIELKRXXXXXXXXXXXXXRPXXXXXXX 60
            ++   ++D DV    V+  G+HS NL RV++G++L R                      
Sbjct: 99  FETLHNILDLDVEKETVKTPGSHSRNLRRVRQGLDLIRAIFEQFLIADDYS--------L 150

Query: 61  XXXXXMAYAAVFARYHDKNVQSTVADSICAIPVKSISDFFATINETDESAAAEMQKYIDA 120
                 AY  V A +H   V++ V   +  +P +        +NETD+S    M++Y++A
Sbjct: 151 KDAATTAYTEVCAPFHTWAVRTAVYAGMYTLPTRD--QLLLRLNETDQSVEKNMRRYMEA 208

Query: 121 ANGIISYIDELFASRGVSADF 141
           +  II YID+L+  R +  D+
Sbjct: 209 SRPIIEYIDKLYIERNIKLDW 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,000,325
Number of extensions: 50703
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)