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Os08g0556000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2 antigen) (CLL-associated antigen KW-14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.94 (0.021) R2 : 0.486
β1 : 0.86 (0.0769) R2dD : 0.146 R2D : 0.0746
β2 : 0.879 (0.0539) R2dC : 0.302 R2C : 0.287
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.351 (0.0448) R2dN8 : 0.0926 R2N8 : 0.0358
σ : 0.395
deviance : 71.04
__
_____
C
peak time of C : 7.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.97 0.373 8.93 0.845 0.716 0.598 -0.135 -1.17 0.451 8.34 90.24 234 -- --
65.33 0.376 8.93 0.827 0.723 0.619 -0.309 -- 0.438 8.27 91.53 233 -- --
63.03 0.37 8.93 0.843 0.717 0.594 -- -1.21 0.451 8.33 90.2 234 -- --
65.68 0.377 8.92 0.822 0.714 0.562 -- -- 0.447 8.36 90.54 236 -- --
83.74 0.426 8.94 0.804 -- 0.894 -- -1 0.495 -- 85 399 -- --
70.8 0.394 8.94 0.867 0.88 -- -0.295 -- 0.35 7.53 -- -- -- --
71.04 0.395 8.94 0.86 0.879 -- -- -- 0.351 7.55 -- -- -- --
86.07 0.432 8.93 0.743 -- 0.888 -- -- 0.491 -- 85 420 -- --
82.26 0.422 8.94 -- 0.665 0.64 -- -- 0.365 8.59 88.93 264 -- --
112.47 0.496 8.96 0.873 -- -- -- -- 0.365 -- -- -- -- --
90.52 0.445 8.96 -- 0.887 -- -- -- 0.255 7.48 -- -- -- --
100.37 0.467 8.95 -- -- 0.968 -- -- 0.421 -- 85.22 405 -- --
132.55 0.537 8.98 -- -- -- -- -- 0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.77 wind 9.0 270 < th dose dependent rect. 6 21
2 53.24 wind 9.0 90 < th dose dependent rect. 8 20
5 53.73 wind 5.0 270 < th dose independent rect. 6 21
12 54.23 wind 5.0 90 < th dose independent rect. 8 20
22 55.11 precipitation 0.1 270 < th dose independent rect. 6 21
23 55.11 precipitation 0.1 270 < th dose dependent rect. 6 21
29 55.35 temperature 30.0 270 < th dose dependent rect. 2 4
31 55.37 temperature 25.0 270 < th dose independent rect. 2 4
34 55.44 temperature 30.0 270 < th dose dependent rect. 3 2
46 55.59 wind 9.0 270 < th dose dependent rect. 17 9
48 55.68 wind 5.0 270 < th dose independent rect. 17 9
66 56.15 precipitation 0.1 270 < th dose independent rect. 3 3
68 56.15 precipitation 0.1 270 < th dose dependent rect. 3 3
69 56.16 wind 9.0 270 < th dose independent rect. 3 3
70 56.16 temperature 10.0 270 > th dose independent rect. 3 3
73 56.16 humidity 50.0 270 > th dose independent rect. 3 3
76 56.16 atmosphere 995.0 270 > th dose independent rect. 3 3
77 56.16 atmosphere 1015.0 270 < th dose independent rect. 3 3
78 56.16 radiation 20.0 270 < th dose independent rect. 3 3
81 56.16 temperature 10.0 270 > th dose independent rect. 6 21
82 56.17 radiation 40.0 270 < th dose dependent rect. 3 3
96 56.40 wind 9.0 10 < th dose dependent rect. 8 21
117 56.51 radiation 40.0 10 < th dose dependent rect. 5 17
122 56.56 humidity 50.0 270 > th dose dependent rect. 3 3
134 56.71 radiation 1.0 270 < th dose dependent rect. 3 15
143 56.79 atmosphere 995.0 270 > th dose independent rect. 14 16
147 56.84 precipitation 0.1 270 < th dose independent rect. 7 18
148 56.84 precipitation 0.1 270 < th dose dependent rect. 7 18
152 56.86 radiation 1.0 270 < th dose independent rect. 3 15
184 57.09 wind 9.0 270 < th dose dependent rect. 3 3
187 57.10 precipitation 0.1 90 < th dose independent rect. 8 20
190 57.10 precipitation 0.1 90 < th dose dependent rect. 8 20
194 57.13 radiation 1.0 270 < th dose dependent rect. 3 11
204 57.24 humidity 50.0 270 > th dose independent rect. 14 16
210 57.28 wind 5.0 90 < th dose independent rect. 21 7
232 57.35 temperature 10.0 90 > th dose independent rect. 8 20
254 57.37 radiation 1.0 270 < th dose dependent rect. 3 7
273 57.44 wind 9.0 90 < th dose dependent rect. 21 7
275 57.47 temperature 15.0 270 > th dose independent rect. 6 8
282 57.49 temperature 10.0 90 > th dose dependent rect. 8 20
283 57.50 radiation 20.0 30 < th dose independent rect. 5 17
289 57.52 radiation 10.0 14400 < th dose dependent rect. 23 5
301 57.56 temperature 10.0 10 > th dose dependent rect. 8 21
303 57.58 radiation 40.0 90 < th dose dependent rect. 4 13
311 57.61 precipitation 0.1 270 < th dose independent rect. 17 9
312 57.61 radiation 1.0 270 < th dose independent rect. 3 11
314 57.61 precipitation 0.1 270 < th dose dependent rect. 17 9
317 57.62 wind 9.0 270 < th dose independent rect. 6 8
320 57.63 radiation 40.0 90 < th dose independent rect. 4 17
352 57.69 radiation 40.0 270 < th dose independent rect. 14 16
360 57.71 precipitation 0.1 270 < th dose independent rect. 1 6
362 57.71 precipitation 0.1 270 < th dose dependent rect. 1 6
363 57.72 radiation 20.0 270 < th dose independent rect. 1 6
366 57.73 wind 9.0 270 < th dose independent rect. 1 6
367 57.73 temperature 10.0 270 > th dose independent rect. 1 6
370 57.73 humidity 50.0 270 > th dose independent rect. 1 6
373 57.73 atmosphere 995.0 270 > th dose independent rect. 1 6
374 57.73 atmosphere 1015.0 270 < th dose independent rect. 1 6
376 57.73 temperature 10.0 270 > th dose independent rect. 7 18
377 57.74 precipitation 0.1 270 < th dose independent rect. 6 8
380 57.74 precipitation 0.1 270 < th dose dependent rect. 6 8
389 57.77 radiation 1.0 270 > th dose independent rect. 6 8
392 57.77 atmosphere 1015.0 90 < th dose dependent rect. 4 3
396 57.78 atmosphere 995.0 270 > th dose independent rect. 6 8
397 57.78 atmosphere 1015.0 270 < th dose independent rect. 6 8
398 57.78 temperature 10.0 270 > th dose independent rect. 14 16
410 57.83 humidity 50.0 10 > th dose dependent rect. 5 3
437 57.88 radiation 1.0 270 < th dose independent rect. 3 7
438 57.88 radiation 40.0 10 < th dose dependent rect. 5 3
451 57.93 radiation 40.0 10 < th dose dependent rect. 5 13
467 57.97 wind 5.0 90 < th dose independent rect. 11 17
472 57.98 temperature 10.0 90 > th dose dependent rect. 21 7
492 58.01 wind 7.0 90 < th dose dependent rect. 11 17
503 58.05 wind 1.0 270 > th dose independent rect. 2 4
544 58.12 atmosphere 995.0 270 > th dose independent rect. 2 16
581 58.18 radiation 40.0 270 < th dose dependent rect. 15 15
597 58.21 temperature 10.0 90 > th dose independent rect. 21 7
598 58.21 temperature 30.0 90 < th dose independent rect. 21 7
599 58.21 humidity 50.0 90 > th dose independent rect. 21 7
602 58.21 atmosphere 995.0 90 > th dose independent rect. 21 7
603 58.21 radiation 1.0 90 < th dose independent rect. 21 7
610 58.21 temperature 10.0 90 > th dose independent rect. 4 17
611 58.21 atmosphere 1015.0 90 < th dose independent rect. 4 17
612 58.21 radiation 1.0 90 < th dose dependent rect. 21 7
621 58.22 wind 9.0 270 < th dose independent rect. 14 16
639 58.25 humidity 50.0 270 > th dose independent rect. 6 8
641 58.26 precipitation 0.1 90 < th dose independent rect. 21 7
646 58.26 precipitation 0.1 90 < th dose dependent rect. 21 7
648 58.27 wind 7.0 10 < th dose independent rect. 5 3
650 58.27 temperature 10.0 10 > th dose independent rect. 5 3
652 58.27 temperature 30.0 10 < th dose independent rect. 5 3
654 58.27 humidity 50.0 10 > th dose independent rect. 5 3
656 58.27 atmosphere 995.0 10 > th dose independent rect. 5 3
657 58.27 atmosphere 1015.0 10 < th dose independent rect. 5 3
659 58.27 temperature 10.0 10 > th dose independent rect. 8 21
665 58.28 precipitation 0.1 10 < th dose independent rect. 8 21
667 58.28 precipitation 0.1 10 < th dose dependent rect. 8 21
681 58.32 radiation 40.0 10 < th dose independent rect. 5 3
691 58.34 precipitation 0.1 10 < th dose independent rect. 5 3
693 58.34 radiation 1.0 270 > th dose independent rect. 17 21
694 58.34 precipitation 0.1 10 < th dose dependent rect. 5 3
712 58.37 atmosphere 995.0 90 > th dose independent rect. 4 17
719 58.40 radiation 1.0 270 > th dose independent sin 2 NA
723 58.40 wind 9.0 270 < th dose dependent rect. 6 8
747 58.47 atmosphere 1015.0 270 < th dose independent rect. 6 20
757 58.49 wind 9.0 10 < th dose dependent rect. 5 3
774 58.52 wind 7.0 270 < th dose independent rect. 21 14
780 58.53 wind 9.0 4320 < th dose independent rect. 5 4
803 58.58 radiation 1.0 270 < th dose dependent sin 2 NA
806 58.58 temperature 10.0 270 > th dose dependent rect. 19 7
809 58.60 radiation 1.0 270 < th dose independent sin 2 NA
823 58.62 temperature 15.0 90 > th dose independent rect. 8 7
824 58.62 radiation 1.0 90 > th dose independent rect. 8 7
886 58.69 atmosphere 995.0 270 > th dose independent rect. 12 9
896 58.72 wind 9.0 90 < th dose independent rect. 8 7
902 58.73 atmosphere 995.0 90 > th dose independent rect. 8 20
903 58.73 wind 9.0 270 < th dose dependent rect. 20 16
928 58.78 radiation 1.0 10 > th dose independent rect. 8 8
934 58.79 wind 1.0 270 > th dose independent rect. 13 17
949 58.81 wind 1.0 270 > th dose independent rect. 11 10
967 58.86 wind 9.0 90 < th dose independent rect. 4 17
995 58.91 atmosphere 1015.0 90 < th dose independent rect. 8 20