Os08g0554000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD-40 repeat containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os08g0554000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD-40 repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.17 | 0.221 | 9.6 | 0.139 | 0.805 | 0.292 | -0.0493 | 0.2 | 0.424 | 1.39 | 70.11 | 1457 | -- | -- |
| 22.26 | 0.22 | 9.6 | 0.158 | 0.809 | 0.297 | -0.0642 | -- | 0.43 | 1.4 | 70 | 1434 | -- | -- |
| 22.18 | 0.219 | 9.6 | 0.141 | 0.804 | 0.294 | -- | 0.199 | 0.425 | 1.39 | 70.15 | 1458 | -- | -- |
| 22.26 | 0.22 | 9.6 | 0.163 | 0.808 | 0.298 | -- | -- | 0.435 | 1.39 | 70 | 1434 | -- | -- |
| 42.18 | 0.304 | 9.6 | 0.16 | -- | 0.499 | -- | 0.0987 | 0.369 | -- | 71 | 1674 | -- | -- |
| 25.73 | 0.238 | 9.6 | 0.101 | 0.804 | -- | -0.113 | -- | 0.39 | 1.37 | -- | -- | -- | -- |
| 25.78 | 0.238 | 9.6 | 0.105 | 0.804 | -- | -- | -- | 0.391 | 1.36 | -- | -- | -- | -- |
| 42.23 | 0.304 | 9.6 | 0.162 | -- | 0.5 | -- | -- | 0.369 | -- | 71.5 | 1683 | -- | -- |
| 23.03 | 0.224 | 9.59 | -- | 0.806 | 0.303 | -- | -- | 0.422 | 1.39 | 70 | 1471 | -- | -- |
| 65.56 | 0.378 | 9.59 | 0.136 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 26.07 | 0.239 | 9.61 | -- | 0.806 | -- | -- | -- | 0.379 | 1.37 | -- | -- | -- | -- |
| 38.77 | 0.291 | 9.6 | -- | -- | 0.519 | -- | -- | 0.393 | -- | 73.25 | 1681 | -- | -- |
| 66.05 | 0.379 | 9.6 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 5 | 21.23 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 11 | 21.32 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 13 | 21.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 30 | 21.44 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 34 | 21.45 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 35 | 21.46 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 42 | 21.48 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 44 | 21.49 | humidity | 60.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 49 | 21.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 52 | 21.51 | humidity | 60.0 | 720 | > th | dose independent | rect. | 10 | 4 |
| 59 | 21.52 | radiation | 10.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 76 | 21.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 84 | 21.58 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 85 | 21.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 91 | 21.59 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 99 | 21.61 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 100 | 21.61 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 106 | 21.62 | temperature | 30.0 | 720 | < th | dose independent | sin | 5 | NA |
| 107 | 21.62 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 2 |
| 113 | 21.62 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 120 | 21.63 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 124 | 21.63 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 158 | 21.65 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 160 | 21.66 | temperature | 20.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 162 | 21.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 4 |
| 208 | 21.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 217 | 21.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 221 | 21.70 | radiation | 10.0 | 720 | < th | dose independent | sin | 13 | NA |
| 228 | 21.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 248 | 21.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 255 | 21.72 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 281 | 21.73 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 282 | 21.73 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 287 | 21.74 | humidity | 60.0 | 720 | > th | dose independent | rect. | 1 | 20 |
| 304 | 21.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 314 | 21.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 322 | 21.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 346 | 21.76 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 347 | 21.77 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 348 | 21.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 357 | 21.77 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 371 | 21.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 375 | 21.78 | temperature | 20.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 399 | 21.78 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 412 | 21.79 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 491 | 21.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 14 |
| 495 | 21.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 18 |
| 527 | 21.83 | humidity | 60.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 565 | 21.84 | radiation | 40.0 | 720 | < th | dose independent | rect. | 9 | 4 |
| 612 | 21.85 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 810 | 21.89 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 820 | 21.89 | radiation | 1.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 859 | 21.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 866 | 21.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 916 | 21.90 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 946 | 21.91 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |