Os08g0546400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os08g0546400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.48 | 0.437 | 9.03 | -1.35 | 0.364 | 0.964 | -0.688 | -1.76 | -0.24 | 13.6 | 20 | 1412 | 5.08 | 1.21 |
| 101.89 | 0.47 | 9.05 | -1.97 | 0.271 | 1.06 | -0.797 | -- | -0.309 | 13.5 | 20.04 | 1339 | 5.47 | 1.23 |
| 88.26 | 0.438 | 9.03 | -1.38 | 0.357 | 0.974 | -- | -1.77 | -0.237 | 13.5 | 20 | 1366 | 5.1 | 1.23 |
| 102.29 | 0.471 | 9.1 | -2.07 | 0.345 | 1 | -- | -- | -0.393 | 13.3 | 20 | 1331 | 5.48 | 1.17 |
| 88.39 | 0.438 | 9.03 | -1.43 | -- | 1.25 | -- | -2.06 | -0.253 | -- | 20 | 2154 | 5.44 | 0.967 |
| 159.63 | 0.592 | 9.17 | -2.39 | 0.405 | -- | -0.767 | -- | -0.734 | 14 | -- | -- | -- | -- |
| 161.86 | 0.596 | 9.17 | -2.41 | 0.403 | -- | -- | -- | -0.738 | 13.8 | -- | -- | -- | -- |
| 100.29 | 0.466 | 9.09 | -1.77 | -- | 1.42 | -- | -- | -0.35 | -- | 20.24 | 2119 | 6.03 | 0.75 |
| 115.06 | 0.5 | 9.01 | -- | 0.374 | 2.43 | -- | -- | -0.027 | 14.7 | 16.75 | 47520 | 5.81 | 0.346 |
| 171.7 | 0.612 | 9.18 | -2.43 | -- | -- | -- | -- | -0.747 | -- | -- | -- | -- | -- |
| 315.44 | 0.831 | 9.11 | -- | 0.448 | -- | -- | -- | -0.469 | 14 | -- | -- | -- | -- |
| 123.6 | 0.518 | 9.01 | -- | -- | 2.45 | -- | -- | -0.012 | -- | 16.76 | 47520 | 5.82 | 0.342 |
| 327.52 | 0.845 | 9.12 | -- | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 88.51 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 4 | 88.66 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 9 | 88.98 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 10 | 89.06 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 13 | 89.19 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 14 | 89.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 19 | 92.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 21 | 92.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 24 | 92.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 30 | 93.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 33 | 93.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 56 | 94.75 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 75 | 95.45 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 114 | 96.54 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 130 | 97.20 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 159 | 98.16 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 162 | 98.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 175 | 98.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 197 | 99.18 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 199 | 99.19 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 200 | 99.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 219 | 99.42 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 261 | 99.77 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 273 | 99.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 296 | 100.08 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 317 | 100.21 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 335 | 100.30 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 348 | 100.43 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 364 | 100.55 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 379 | 100.58 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 381 | 100.59 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 439 | 100.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 441 | 100.88 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 449 | 100.93 | temperature | 15 | 43200 | < th | dose dependent | sin | 8 | NA |
| 470 | 101.01 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 482 | 101.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 654 | 101.66 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 762 | 101.96 | radiation | 10 | 1440 | < th | dose independent | sin | 13 | NA |
| 838 | 102.15 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 858 | 102.22 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 862 | 102.23 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 914 | 102.36 | temperature | 15 | 43200 | < th | dose independent | sin | 9 | NA |
| 927 | 102.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 981 | 102.51 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 15 |