BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0546400 Os08g0546400|AK070009
(582 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11740.1 | chr4:7071955-7075256 FORWARD LENGTH=565 361 e-100
AT4G23040.1 | chr4:12075672-12078622 REVERSE LENGTH=526 320 2e-87
AT4G00752.1 | chr4:317771-320793 REVERSE LENGTH=470 110 2e-24
AT4G10790.1 | chr4:6640752-6643035 REVERSE LENGTH=481 57 3e-08
>AT4G11740.1 | chr4:7071955-7075256 FORWARD LENGTH=565
Length = 564
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 258/593 (43%), Positives = 320/593 (53%), Gaps = 42/593 (7%)
Query: 1 MVRPTQDAIDTFVGITGADEAVAARKLEEHHGDLNEAVNAYFNEGDRTSTR-ANENPIPT 59
M P Q+AIDTF+ ITGA +AVA +KLEEH GDLN+AVNAYF+EGDR R A N
Sbjct: 1 MATPNQEAIDTFISITGASDAVALQKLEEHRGDLNQAVNAYFSEGDRNVVREAPVNDDDE 60
Query: 60 GYDDMELDEPFGPVPTFHMP--LGN-PFSLLDQGFLER---AAAVYGEGPHITHPREVRR 113
D + P P+ F+ +G PFSLLD F R + + P ++HPREVR+
Sbjct: 61 MDIDDVIPAPQSPLSMFNAARTIGRPPFSLLDSDFARRVFDSDPLMPRPPFVSHPREVRQ 120
Query: 114 IDVEVKDNNTPAGSSGHGPVIEDVTGHEFSHGP-EIRGTVLIXXXXXXXNLPSAQDTRLP 172
I +EVKD++ P+G S P IEDVT GP +GTV+I D +P
Sbjct: 121 IPIEVKDSSGPSGRSSDAPTIEDVTETAHVQGPVTTQGTVIIDEES---------DDDIP 171
Query: 173 SNPSTSNYSVPRAPPIANVSDYN-NDIEEEMVRAAIEASKRDADGLTNGLRSGERENASR 231
P + A +AN ++ + NDIEEEM+RAAIEASK++A+G +N L E
Sbjct: 172 FAPMGRSRQDRPAGSVANNNNQDYNDIEEEMIRAAIEASKKEAEGSSNPLL---EERPLH 228
Query: 232 GRDDDEIARAVSMSLETAEQERVLRQVGAHVSDHSDLSDKEDIEGATGTVERQVPTSGKV 291
DDD+IA AV+MSL++AE+E VLR G S S++ GA+ Q P +
Sbjct: 229 MEDDDDIAIAVTMSLKSAEEE-VLRSQGYKAS-TSEI-------GASAVTAAQGPQDTQA 279
Query: 292 GTSDQLVDEENF--QDDDVEEHSFVRQHSRRVPSGNDESTEALERANSHPSSLLPHNIEN 349
F DDV+E VR RR SG+ A + P H N
Sbjct: 280 LNGRLAAPSSPFDDDSDDVDEQPLVRHRPRRAASGSLAPPNADRSRSGSPEE--EHASIN 337
Query: 350 NQQFNGVFPSEWGGISSEEHDEAVMLEAAMFGGIP--GRAAYPFSLPYHQNSSRYPTVAH 407
+ FPSEWGGISSEEHDEAVMLEAAMFGGIP G PF P + R
Sbjct: 338 PAERGSGFPSEWGGISSEEHDEAVMLEAAMFGGIPETGYNHLPFLPPQPRAQPRP----- 392
Query: 408 PPSPTLTAQRLLREQQDDEYLASLEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 467
PSP+LTAQRL+REQQDDEY+ASL+AD
Sbjct: 393 -PSPSLTAQRLIREQQDDEYVASLQADRDKEMKSIRDAEARQLEEETARKAFLEEEKKKE 451
Query: 468 XXXXXXXXXXXXXXXXXXXXXXSLPKEPLPDDVGAVTVVVRMPDGRRQGRRFMKSDNLQV 527
SLPKEP D+ A+T+++RMPDG R+GRRF+KSD LQ
Sbjct: 452 EEAQRKLEEEQELERQLDAKEASLPKEPQADEENAITLLIRMPDGTRRGRRFLKSDKLQT 511
Query: 528 LFDFIDISRTFKPGTYRLVRSYPRRAFTDSESQMSLSDLGLNSKQEALFLEQI 580
LF+FIDI+R KP TYRLVR YPR AF D ES+ +L+DLGL SKQEALFLE I
Sbjct: 512 LFNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 564
>AT4G23040.1 | chr4:12075672-12078622 REVERSE LENGTH=526
Length = 525
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 238/594 (40%), Positives = 309/594 (52%), Gaps = 83/594 (13%)
Query: 1 MVRPTQDAIDTFVGITGADEAVAARKLEEHHGDLNEAVNAYFNEGDRTSTRANENPIPTG 60
M PTQ+AIDTF+ ITG+ AVA RKLEE+ G+LN AVNAYF GD+ S
Sbjct: 1 MATPTQEAIDTFMTITGSSNAVAVRKLEEYRGNLNRAVNAYFTHGDQNS----------- 49
Query: 61 YDDMELDEPFGPVPTFHMPLGNPFSLLDQGF---LERAAAVYGEGPHITHPREVRRIDVE 117
YD M++D+ PV + +PF L D F L V P ++HPRE R I +E
Sbjct: 50 YDAMDIDDGVTPVLS-EARTTDPFPLRDPNFGRSLFDNDPVMSRPPFVSHPREAREIPIE 108
Query: 118 VKDNNTPAGSSGHGPVIEDVTGHEFSHGPEIRGTVLIXXXXXXXN--LPSAQDTRLPSNP 175
VKD+N P+G S P IEDVT +HGP + V+I N P+ Q
Sbjct: 109 VKDSNGPSGQSNDAPTIEDVTETAQAHGPAAQEAVIIDEVSDDDNQSAPTGQ-------- 160
Query: 176 STSNYSVPRAPPIANVSDYNNDIEEEMVRAAIEASKRDADGLTNGLRSGERENASRGRDD 235
S ++VP N+ Y NDIEE+++RAAIEASK + +G
Sbjct: 161 --SRHAVPVGSAENNMQHY-NDIEEQIIRAAIEASK---------METG----------- 197
Query: 236 DEIARAVSMSLETAEQERVLRQVGAHVSDHSDLSDKEDIEGATGTVER-QVPTSGKVGTS 294
D++ ++V ++++AE+E VLR G S S++E E + V++ ++G+
Sbjct: 198 DDVTKSV--TVQSAERE-VLRSEGWKASS----SEREASEMVSIPVQQGSRASNGRFAAP 250
Query: 295 DQLVDEENFQDDDVEEHS------FVRQHSRRVPSGNDES-TEALERANSHPSSLLPHNI 347
L ++++ DDD ++ V RR SG+ S + L R+ + I
Sbjct: 251 SSLSEDDDDDDDDDPDYVEEEEEPLVSHRPRRAVSGSRSSLNDDLPRSPEAEDA----TI 306
Query: 348 ENNQQFNGVFPSEWGGISSEEHDEAVMLEAAMFGGIPGRAAYPFSLPYHQNSSRYPT-VA 406
+ NG FPSEWGGISSEEHDEA+MLEAAMFGGI + + +PY + YP
Sbjct: 307 HSPGAGNG-FPSEWGGISSEEHDEAIMLEAAMFGGI---SESEYGVPY----AHYPQRTQ 358
Query: 407 HPPSPTLTAQRLLREQQDDEYLASLEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 466
PPSP+LTAQRL+REQQDDEYLASLEAD
Sbjct: 359 RPPSPSLTAQRLIREQQDDEYLASLEAD-------RVKAEARRLEEEAARVEAIEEAKRK 411
Query: 467 XXXXXXXXXXXXXXXXXXXXXXXSLPKEPLPDDVGAVTVVVRMPDGRRQGRRFMKSDNLQ 526
SLP+EP + A+T+ VR+PDG R GRRF KSD LQ
Sbjct: 412 EEEARRKVEEEQELERQLVSKEASLPQEPPAGEENAITLQVRLPDGTRHGRRFFKSDKLQ 471
Query: 527 VLFDFIDISRTFKPGTYRLVRSYPRRAFTDSESQMSLSDLGLNSKQEALFLEQI 580
LFDFIDI R KP TYRLVR YPRRAF D E +L+D+GL SKQEALFLE I
Sbjct: 472 SLFDFIDICRVVKPNTYRLVRPYPRRAFGDGECSSTLNDIGLTSKQEALFLELI 525
>AT4G00752.1 | chr4:317771-320793 REVERSE LENGTH=470
Length = 469
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 67/91 (73%)
Query: 490 SLPKEPLPDDVGAVTVVVRMPDGRRQGRRFMKSDNLQVLFDFIDISRTFKPGTYRLVRSY 549
+LP EP ++ A+T++VRMPD R GRRF+KSD L+ LFDFID + KPGTYR+VR Y
Sbjct: 378 ALPIEPSGENEDAITLLVRMPDSSRHGRRFLKSDKLKYLFDFIDAAGLVKPGTYRVVRPY 437
Query: 550 PRRAFTDSESQMSLSDLGLNSKQEALFLEQI 580
PRRAF+ + ++ +L L +KQEALFLE +
Sbjct: 438 PRRAFSIQDGALTFEELSLTNKQEALFLELL 468
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 97/203 (47%), Gaps = 45/203 (22%)
Query: 194 YNNDIEEEMVRAAIEASKRD-ADGLTNGLRSGERENASR-------GRDDDEIARAVSMS 245
++ND EEEM+RAAIEASK+D +G N S + +S R+D++IARA+SMS
Sbjct: 184 HSNDAEEEMIRAAIEASKKDFQEGRLNTRYSLDNNPSSVLSPREVINREDEDIARAISMS 243
Query: 246 LETAEQERVLRQVGAHVSDHSDLSDKEDIEGATGTVERQVPTSGKVGTSDQLVDEENFQD 305
LE E E VLR A S + + + T R P S V QD
Sbjct: 244 LEMEEHESVLRDQLAEFMPQS-VEHHDPCQSNTNESTRYQPGSSSV------------QD 290
Query: 306 DDVEEHSFVRQHSRRVPSGNDESTEALERANSHPSSLLPHNIENNQQFNGVFPSEWGGIS 365
N E + NS SS H+++N++ G +P EWGGI
Sbjct: 291 -------------------NREDMNQKQPINS--SSQHRHDLQNSE---GSYPEEWGGIP 326
Query: 366 SEEHDEAVMLEAAMFGGIPGRAA 388
S+E EA+MLE A+FGG+ +A
Sbjct: 327 SKELQEAIMLEKAIFGGVANESA 349
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 11/67 (16%)
Query: 1 MVRPTQDAIDTFVGITGADEAVAARKLEEHHGDLNEAVNAYFNEGDRTSTRANENPIPTG 60
MV PT+DAI +++ ITGA E++A ++LEEH +L EA+NA+F + +R+
Sbjct: 1 MVSPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINAHFRDVERSI----------- 49
Query: 61 YDDMELD 67
YDD LD
Sbjct: 50 YDDSSLD 56
>AT4G10790.1 | chr4:6640752-6643035 REVERSE LENGTH=481
Length = 480
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 16/186 (8%)
Query: 405 VAHPPSPTLTAQRL----------LREQQDDEYLASLEADXXXXXXXXXXXXXXXXXXXX 454
+ SPTL R+ LRE+QD Y A+LEAD
Sbjct: 297 IVEDSSPTLVTARVEAEERRTNLRLREEQDAAYRAALEADQAREQQRQEEKERLEREAAE 356
Query: 455 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPKEPL--PDDVGAVTVVVRMPDG 512
+L +EP PD V+VR P+G
Sbjct: 357 AERKLKEEEEARERAAREAEERQAARVRMRQEKALALGEEPEKGPD---VTQVLVRFPNG 413
Query: 513 RRQGRRFMKSDNLQVLFDFIDISRTFKPGTYRLVRSYPRRAFTDSESQMSLSDLGLNSKQ 572
R+GR F +Q L+D++D Y L+ ++PR + + MSL D GL+ Q
Sbjct: 414 ERKGRMFKSETKIQTLYDYVDSLGLLDTEEYSLITNFPRTVYGRDKESMSLKDAGLH-PQ 472
Query: 573 EALFLE 578
+LF+E
Sbjct: 473 ASLFIE 478
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,924,556
Number of extensions: 525891
Number of successful extensions: 1499
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1490
Number of HSP's successfully gapped: 8
Length of query: 582
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 478
Effective length of database: 8,255,305
Effective search space: 3946035790
Effective search space used: 3946035790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)