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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0544300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0331) R2 : 0.0502
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.342 (0.0697) R2dN8 : 0.0648 R2N8 : 0.0502
σ : 0.624
deviance : 178.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.38 0.613 2.91 -0.0956 0.082 0.842 0.31 0.086 0.368 19.5 1.141 36 -- --
170.38 0.608 2.91 -0.0977 0.0833 0.849 0.309 -- 0.368 19.4 1.148 35 -- --
170.57 0.608 2.91 -0.106 0.0978 0.864 -- 0.0223 0.37 17.9 1.161 35 -- --
170.57 0.608 2.91 -0.106 0.0977 0.865 -- -- 0.37 17.9 1.165 35 -- --
170.95 0.609 2.9 -0.0937 -- 0.786 -- 0.31 0.366 -- 1.1 35 -- --
177.9 0.625 2.91 -0.0206 0.0583 -- 0.333 -- 0.34 0.302 -- -- -- --
178.34 0.625 2.91 -0.0344 0.0644 -- -- -- 0.337 2.07 -- -- -- --
170.98 0.609 2.91 -0.101 -- 0.824 -- -- 0.366 -- 1.1 35 -- --
170.86 0.609 2.9 -- 0.0945 0.848 -- -- 0.38 17.8 1.149 35 -- --
178.59 0.624 2.91 -0.0317 -- -- -- -- 0.339 -- -- -- -- --
178.37 0.625 2.91 -- 0.0638 -- -- -- 0.341 2.06 -- -- -- --
171.25 0.609 2.9 -- -- 0.804 -- -- 0.376 -- 1.1 35 -- --
178.61 0.624 2.91 -- -- -- -- -- 0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.04 wind 1.0 30 < th dose independent rect. 23 5
9 165.48 wind 1.0 30 < th dose dependent rect. 23 5
15 166.51 wind 1.0 30 > th dose independent sin 14 NA
29 166.91 wind 1.0 30 < th dose independent sin 14 NA
34 167.05 wind 1.0 30 < th dose dependent sin 15 NA
40 167.25 wind 1.0 30 < th dose independent rect. 10 18
71 168.42 wind 1.0 30 < th dose dependent rect. 10 18
74 168.47 wind 1.0 30 < th dose independent rect. 6 23
100 169.01 wind 1.0 10 < th dose independent rect. 2 2
128 169.54 wind 1.0 30 < th dose dependent rect. 2 3
139 169.78 humidity 90.0 10 > th dose independent rect. 19 10
141 169.82 atmosphere 1005.0 30 > th dose dependent rect. 2 1
142 169.86 temperature 20.0 30 > th dose dependent rect. 2 1
147 169.89 atmosphere 1005.0 30 > th dose independent rect. 2 1
154 169.94 humidity 90.0 10 > th dose independent rect. 22 7
156 169.95 wind 1.0 30 > th dose independent rect. 11 23
168 170.02 humidity 90.0 90 > th dose dependent rect. 22 1
170 170.03 wind 3.0 30 < th dose dependent rect. 2 1
173 170.04 wind 1.0 30 > th dose independent rect. 15 11
174 170.05 wind 1.0 30 < th dose dependent rect. 23 13
177 170.06 temperature 20.0 30 > th dose independent rect. 2 1
187 170.15 wind 1.0 30 < th dose independent rect. 23 13
189 170.16 wind 9.0 30 < th dose independent rect. 3 23
193 170.17 wind 1.0 30 > th dose independent rect. 3 23
195 170.17 humidity 90.0 10 > th dose dependent rect. 22 7
202 170.20 humidity 80.0 30 > th dose independent rect. 2 1
204 170.20 humidity 90.0 10 > th dose dependent rect. 20 9
216 170.24 temperature 10.0 30 > th dose independent rect. 2 1
218 170.24 temperature 30.0 30 < th dose independent rect. 2 1
219 170.24 humidity 50.0 30 > th dose independent rect. 2 1
223 170.24 atmosphere 1010.0 30 < th dose independent rect. 2 1
225 170.24 radiation 1.0 30 < th dose independent rect. 2 1
230 170.24 precipitation 0.1 30 < th dose independent rect. 2 1
231 170.24 temperature 10.0 30 > th dose independent rect. 3 23
232 170.24 radiation 1.0 30 < th dose dependent rect. 2 1
237 170.24 precipitation 0.1 30 < th dose dependent rect. 2 1
240 170.25 humidity 50.0 30 > th dose dependent rect. 2 1
270 170.35 humidity 90.0 10 > th dose dependent rect. 11 18
318 170.60 humidity 90.0 10 > th dose independent rect. 11 18
329 170.62 wind 1.0 30 > th dose independent rect. 15 15
332 170.64 temperature 25.0 720 > th dose independent rect. 11 6
345 170.67 wind 1.0 30 > th dose independent rect. 15 23
352 170.68 temperature 30.0 30 < th dose dependent rect. 2 1
366 170.70 atmosphere 1015.0 30 < th dose dependent rect. 2 1
415 170.81 humidity 90.0 10 > th dose independent rect. 8 21
424 170.82 temperature 25.0 720 > th dose independent rect. 14 1
506 170.97 humidity 90.0 90 < th dose independent rect. 15 10
517 171.00 temperature 25.0 10 < th dose independent rect. 18 11
518 171.00 wind 1.0 30 > th dose independent rect. 15 19
538 171.08 wind 1.0 30 > th dose independent rect. 2 1
574 171.16 wind 5.0 90 > th dose dependent rect. 12 3
598 171.26 wind 1.0 30 < th dose dependent rect. 2 23
659 171.36 wind 1.0 30 < th dose independent rect. 23 1
662 171.37 temperature 25.0 30 > th dose independent rect. 16 17
667 171.37 wind 1.0 30 < th dose dependent no NA NA
691 171.41 temperature 25.0 720 > th dose independent rect. 13 4
699 171.43 wind 7.0 90 > th dose independent rect. 12 3
722 171.45 wind 9.0 90 > th dose dependent rect. 13 2
735 171.49 wind 1.0 30 > th dose independent no NA NA
741 171.50 humidity 90.0 10 > th dose dependent sin 15 NA
758 171.51 temperature 10.0 90 > th dose dependent rect. 15 10
761 171.52 wind 1.0 30 < th dose independent rect. 2 23
779 171.57 wind 1.0 30 < th dose dependent rect. 23 1
782 171.58 wind 1.0 30 < th dose independent no NA NA
795 171.58 humidity 90.0 90 > th dose dependent rect. 19 5
808 171.61 wind 1.0 30 > th dose independent rect. 20 14
901 171.78 temperature 25.0 10 < th dose independent rect. 11 18
903 171.79 temperature 25.0 720 < th dose independent rect. 10 9
927 171.86 humidity 90.0 30 < th dose independent rect. 15 13
928 171.86 humidity 90.0 30 < th dose independent rect. 15 15
930 171.87 temperature 25.0 720 < th dose independent rect. 12 1
943 171.91 temperature 25.0 1440 > th dose independent rect. 11 1
958 171.94 humidity 90.0 30 < th dose independent sin 12 NA
967 171.96 humidity 90.0 10 > th dose independent sin 13 NA
988 172.02 temperature 25.0 720 < th dose independent rect. 11 3