BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0544300 Os08g0544300|AK119307
(821 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263 417 e-116
ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241 239 5e-63
ATMG00820.1 | chrM:228573-229085 REVERSE LENGTH=171 114 2e-25
ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112 80 4e-15
>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
Length = 1262
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/496 (43%), Positives = 303/496 (61%), Gaps = 9/496 (1%)
Query: 306 EPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLD 365
EP + EA W AMD E A+ TW + + I CKWVYK+K +DG+++
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 366 RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVL 425
RYKARLVAKG+ Q+ GID+ +TFSPV K +++++L+++ ++L QLD+ NAFL+G L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 426 EEEVYMEQPPGYEKKSM----PNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKA 481
+EE+YM+ PPGY + PN VC L K++YGLKQA R W+ + S L GFV S +
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 482 DTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEV 541
D + F + + +L+YVDDII+ S+ A L +L F L+DLG L YFLG+E+
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 542 HKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVV 601
+ G+ + Q KYA DLL G+ CKP S P+ S S + G D+ YR ++
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF--VDAKAYRRLI 382
Query: 602 GALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLV 661
G L YL +TR DISF++NK+ QF AP H AV +IL Y+K TV GL + + +
Sbjct: 383 GRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQL 442
Query: 662 SGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIM 721
FSDA + D RRST G+ +FLG +L+SW ++KQ VS+SS EAEY+AL+ AT E+M
Sbjct: 443 QVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMM 502
Query: 722 WVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRER-VARKLLE 780
W+ +EL + + L+CDN A +++ N +FH RTKHIE D H VRER V + L
Sbjct: 503 WLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLS 562
Query: 781 IAYISTKDQVADGFTK 796
++ + +Q DGFT+
Sbjct: 563 YSFQAYDEQ--DGFTE 576
>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
Length = 240
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 153/228 (67%), Gaps = 3/228 (1%)
Query: 495 IFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEK 554
++LL+YVDDI++ S + L+ +LS F++KDLG +HYFLGI++ GL LSQ K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 555 YASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDI 614
YA +L GM +CKP+STPL SV+ P D +RS+VGALQYLTLTRPDI
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---FRSIVGALQYLTLTRPDI 117
Query: 615 SFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPD 674
S+++N VCQ +H PT + +KR+LRYVK T+ GL +N L V F D+DWAG
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177
Query: 675 DRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMW 722
RRST GF FLG N++SWSA++Q TVSRSSTE EY+ALA AE+ W
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | chrM:228573-229085 REVERSE LENGTH=171
Length = 170
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 279 TRLQSGIRKEKVYTDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHL 338
TR ++GI K T+ T EP+S+ A+ + W +AM E AL NKTW L
Sbjct: 3 TRSKAGINKLNPKYSLTI---TTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWIL 59
Query: 339 VPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 398
VPP +N++ CKWV+K K +DG+LDR KARLVAKGF Q GI + +T+SPVV+ ATIR
Sbjct: 60 VPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119
Query: 399 IVLSLA 404
+L++A
Sbjct: 120 TILNVA 125
>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
Length = 111
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 606 YLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFS 665
YLT+TRPD++F++N++ QF A T AV ++L YVK TV GL + L + F+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 666 DADWAGSPDDRRSTGGF 682
D+DWA PD RRS GF
Sbjct: 62 DSDWASCPDTRRSVTGF 78
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,586,098
Number of extensions: 649699
Number of successful extensions: 1354
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 4
Length of query: 821
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 714
Effective length of database: 8,173,057
Effective search space: 5835562698
Effective search space used: 5835562698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)