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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0543000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0204) R2 : 0.000526
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0211 (0.0431) R2dN8 : 0.000679 R2N8 : 0.000526
σ : 0.385
deviance : 68.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.78 0.369 2.97 0.106 0.0473 3.55 -0.574 12.1 0.0351 1.96 995 5827 -- --
66.56 0.383 2.94 -0.017 0.046 0.177 -0.587 -- 0.0178 1.83 995 5827 -- --
62.93 0.369 2.97 0.143 0.0529 4.21 -- 14.3 0.0382 3.35 995 6088 -- --
65.66 0.377 2.93 0.00088 0.0489 0.503 -- -- 0.0432 1.94 997.6 5829 -- --
62.79 0.369 3 0.279 -- 7.48 -- 25.6 0.0542 -- 994.9 5591 -- --
66.6 0.383 2.94 -0.0156 0.0445 -- -0.591 -- 0.0172 1.84 -- -- -- --
67.91 0.386 2.94 0.00234 0.0549 -- -- -- 0.0201 4 -- -- -- --
65.81 0.378 2.93 0.000587 -- 0.5 -- -- 0.0427 -- 997.6 5832 -- --
65.64 0.377 2.93 -- 0.0563 0.505 -- -- 0.0435 3.26 997.6 5832 -- --
68.07 0.386 2.94 0.00458 -- -- -- -- 0.0216 -- -- -- -- --
67.91 0.385 2.94 -- 0.0549 -- -- -- 0.0199 4 -- -- -- --
65.81 0.378 2.93 -- -- 0.5 -- -- 0.0431 -- 997.6 5832 -- --
68.07 0.385 2.94 -- -- -- -- -- 0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.87 atmosphere 995.0 4320 < th dose dependent rect. 14 1
19 57.97 atmosphere 995.0 4320 < th dose independent rect. 14 1
38 58.24 atmosphere 995.0 4320 > th dose independent rect. 8 8
48 58.29 atmosphere 995.0 4320 > th dose independent rect. 12 4
49 58.31 atmosphere 995.0 4320 > th dose independent rect. 10 6
55 58.45 atmosphere 995.0 4320 > th dose independent rect. 14 2
108 58.81 radiation 1.0 4320 < th dose dependent rect. 3 1
109 58.82 atmosphere 995.0 4320 > th dose independent rect. 4 10
120 58.94 radiation 1.0 4320 < th dose dependent rect. 23 1
145 59.24 temperature 20.0 30 > th dose dependent rect. 2 1
149 59.31 atmosphere 1000.0 30 > th dose dependent rect. 2 1
151 59.33 humidity 90.0 30 > th dose independent rect. 2 1
154 59.34 temperature 20.0 30 > th dose independent rect. 2 1
156 59.34 atmosphere 1000.0 30 > th dose independent rect. 2 1
157 59.34 wind 5.0 30 < th dose dependent rect. 2 1
159 59.34 humidity 80.0 30 > th dose dependent rect. 2 1
160 59.35 wind 5.0 30 < th dose independent rect. 2 1
167 59.36 humidity 50.0 30 > th dose dependent rect. 2 1
180 59.38 temperature 10.0 30 > th dose independent rect. 2 1
182 59.38 temperature 30.0 30 < th dose independent rect. 2 1
183 59.38 humidity 50.0 30 > th dose independent rect. 2 1
187 59.38 atmosphere 1010.0 30 < th dose independent rect. 2 1
189 59.38 radiation 1.0 30 < th dose independent rect. 2 1
194 59.38 precipitation 0.1 30 < th dose independent rect. 2 1
195 59.38 temperature 10.0 30 > th dose independent rect. 3 23
196 59.38 radiation 1.0 30 < th dose dependent rect. 2 1
201 59.38 precipitation 0.1 30 < th dose dependent rect. 2 1
208 59.52 atmosphere 1015.0 30 < th dose dependent rect. 2 1
218 59.61 temperature 30.0 30 < th dose dependent rect. 2 1
229 59.66 wind 9.0 1440 < th dose independent rect. 3 1
230 59.66 temperature 10.0 1440 > th dose independent rect. 3 1
233 59.66 temperature 30.0 1440 < th dose independent rect. 3 1
237 59.66 humidity 50.0 1440 > th dose independent rect. 3 1
246 59.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
247 59.66 radiation 1.0 1440 < th dose independent rect. 3 1
294 59.66 temperature 10.0 1440 > th dose independent rect. 4 23
306 59.72 wind 1.0 30 > th dose independent rect. 2 1
374 60.17 precipitation 0.1 4320 > th dose dependent rect. 20 1
375 60.19 atmosphere 995.0 30 > th dose independent rect. 3 23
387 60.45 atmosphere 995.0 4320 > th dose independent rect. 19 19
394 60.50 precipitation 0.1 30 < th dose independent rect. 3 23
395 60.50 precipitation 0.1 30 < th dose dependent rect. 3 23
404 60.60 wind 9.0 30 < th dose independent rect. 3 23
417 60.77 radiation 1.0 4320 < th dose dependent rect. 19 8
429 61.04 radiation 1.0 4320 < th dose dependent rect. 22 4
448 61.17 wind 7.0 4320 > th dose independent rect. 5 2
449 61.17 wind 7.0 4320 > th dose dependent rect. 6 1
450 61.17 radiation 1.0 4320 < th dose dependent rect. 1 1
469 61.63 atmosphere 1000.0 10 < th dose independent rect. 10 2
499 62.19 humidity 50.0 30 > th dose independent rect. 3 23
501 62.21 wind 7.0 4320 < th dose independent rect. 5 2
528 62.86 radiation 20.0 10 < th dose independent rect. 12 1
537 62.94 temperature 30.0 30 < th dose independent rect. 3 23
550 62.97 atmosphere 995.0 4320 < th dose dependent sin 5 NA
564 63.05 atmosphere 1000.0 10 < th dose independent rect. 8 5
566 63.06 atmosphere 995.0 4320 > th dose independent sin 7 NA
590 63.25 precipitation 0.1 4320 < th dose independent rect. 20 1
592 63.25 precipitation 0.1 4320 < th dose dependent rect. 20 1
610 63.27 precipitation 0.1 4320 > th dose independent rect. 20 1
639 63.37 atmosphere 1000.0 10 < th dose independent rect. 1 12
643 63.38 atmosphere 995.0 4320 < th dose independent sin 6 NA
656 63.43 atmosphere 1005.0 90 < th dose dependent rect. 10 1
706 63.65 humidity 90.0 90 < th dose independent rect. 2 1
714 63.66 atmosphere 1005.0 10 < th dose dependent rect. 12 1
716 63.67 precipitation 0.1 4320 > th dose independent rect. 8 1
721 63.67 precipitation 0.1 4320 > th dose dependent rect. 8 1
722 63.68 atmosphere 1015.0 30 < th dose independent rect. 3 23
739 63.75 radiation 10.0 30 < th dose independent rect. 3 23
768 63.86 temperature 25.0 270 > th dose independent rect. 23 4
805 63.93 atmosphere 1000.0 90 > th dose independent rect. 3 16
823 63.97 atmosphere 1000.0 30 > th dose independent sin 2 NA
824 63.97 atmosphere 1000.0 10 < th dose independent sin 1 NA
841 64.00 wind 1.0 10 < th dose independent rect. 15 12
851 64.01 wind 1.0 10 < th dose independent rect. 21 6
879 64.03 radiation 20.0 30 < th dose dependent rect. 3 23
918 64.12 temperature 10.0 30 > th dose dependent rect. 3 23
938 64.19 atmosphere 1000.0 10 < th dose independent rect. 22 15
951 64.20 atmosphere 1000.0 10 < th dose independent rect. 17 20
972 64.21 temperature 25.0 270 > th dose dependent rect. 23 4
985 64.24 precipitation 0.1 4320 < th dose independent rect. 8 1
986 64.24 precipitation 0.1 4320 < th dose dependent rect. 8 1