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Os08g0540500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM (and some other nucleotide) binding motif domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.58 (0.0165) R2 : 0.626
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.13 (0.0425) R2dC : 0.581 R2C : 0.577
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.236 (0.0347) R2dN8 : 0.0491 R2N8 : 0.0453
σ : 0.311
deviance : 44.24
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.54 0.299 9.57 0.173 0.943 0.222 -0.0561 0.251 -0.224 16.8 80 28 -- --
40.85 0.298 9.57 0.168 0.944 0.224 0.0851 -- -0.22 16.8 81.1 43 -- --
40.54 0.297 9.57 0.172 0.941 0.224 -- 0.234 -0.224 16.9 79.7 24 -- --
40.88 0.298 9.57 0.173 0.943 0.223 -- -- -0.22 16.8 81.06 43 -- --
65.56 0.377 9.57 0.103 -- 0.793 -- 0.28 -0.277 -- 74 271 -- --
43.36 0.309 9.57 0.18 1.13 -- 0.0748 -- -0.217 16.4 -- -- -- --
43.37 0.308 9.57 0.181 1.13 -- -- -- -0.216 16.4 -- -- -- --
63.31 0.371 9.57 0.145 -- 0.764 -- -- -0.256 -- 79.67 256 -- --
41.67 0.301 9.58 -- 0.937 0.226 -- -- -0.239 16.8 81.88 43 -- --
112.39 0.495 9.56 0.136 -- -- -- -- -0.246 -- -- -- -- --
44.24 0.311 9.58 -- 1.13 -- -- -- -0.236 16.4 -- -- -- --
63.87 0.372 9.57 -- -- 0.763 -- -- -0.272 -- 79.72 256 -- --
112.88 0.496 9.57 -- -- -- -- -- -0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.01 atmosphere 1000.0 30 > th dose dependent rect. 2 6
3 38.09 atmosphere 1005.0 30 > th dose independent rect. 2 6
11 38.48 temperature 25.0 720 < th dose independent rect. 22 4
13 38.53 atmosphere 1005.0 270 > th dose independent rect. 2 4
16 38.68 humidity 80.0 30 > th dose independent rect. 4 14
19 38.72 humidity 80.0 30 > th dose independent sin 2 NA
25 38.76 atmosphere 1000.0 270 > th dose dependent rect. 2 3
26 38.77 atmosphere 1005.0 270 > th dose independent rect. 23 7
28 38.78 wind 7.0 270 < th dose dependent rect. 7 3
32 38.85 humidity 80.0 30 > th dose independent rect. 2 16
38 38.89 wind 7.0 270 < th dose dependent rect. 6 5
39 38.90 atmosphere 1005.0 90 > th dose independent rect. 4 4
41 38.90 temperature 15.0 90 > th dose independent rect. 11 21
44 38.92 humidity 90.0 270 < th dose independent rect. 7 3
45 38.92 temperature 15.0 10 > th dose independent rect. 11 22
48 38.94 wind 5.0 270 < th dose independent rect. 7 3
51 38.95 humidity 80.0 30 > th dose independent rect. 4 12
64 39.02 humidity 80.0 30 > th dose independent rect. 2 14
70 39.06 atmosphere 1000.0 10 > th dose dependent rect. 24 8
75 39.09 temperature 30.0 10 < th dose independent rect. 11 22
77 39.10 humidity 80.0 10 < th dose independent rect. 9 2
84 39.13 radiation 1.0 270 > th dose independent rect. 16 23
89 39.14 temperature 10.0 30 > th dose dependent rect. 8 18
90 39.15 atmosphere 1005.0 10 > th dose independent rect. 5 3
93 39.15 temperature 30.0 90 < th dose independent rect. 11 21
99 39.18 humidity 80.0 30 > th dose independent rect. 4 10
106 39.20 radiation 10.0 270 > th dose independent rect. 16 18
108 39.20 humidity 90.0 90 < th dose dependent rect. 8 3
111 39.21 humidity 80.0 30 > th dose independent rect. 2 12
122 39.23 atmosphere 1005.0 10 > th dose independent rect. 24 8
126 39.23 radiation 1.0 270 > th dose dependent rect. 16 18
130 39.25 humidity 70.0 30 > th dose dependent rect. 4 14
141 39.29 humidity 90.0 90 < th dose dependent rect. 9 1
143 39.30 humidity 80.0 10 < th dose independent sin 2 NA
146 39.30 humidity 70.0 30 > th dose dependent sin 1 NA
165 39.34 wind 7.0 30 < th dose independent rect. 8 18
176 39.37 temperature 10.0 270 > th dose dependent rect. 7 3
180 39.38 humidity 90.0 10 < th dose dependent rect. 9 2
188 39.40 humidity 50.0 90 > th dose independent rect. 8 3
194 39.42 temperature 10.0 90 > th dose independent rect. 8 3
195 39.42 atmosphere 995.0 90 > th dose independent rect. 8 3
196 39.42 atmosphere 1015.0 90 < th dose independent rect. 8 3
197 39.42 precipitation 0.1 90 < th dose independent rect. 8 3
198 39.42 temperature 30.0 270 < th dose independent rect. 11 19
201 39.42 precipitation 0.1 90 < th dose dependent rect. 8 3
202 39.42 wind 1.0 14400 < th dose dependent rect. 19 12
208 39.43 radiation 1.0 90 > th dose independent rect. 8 3
222 39.45 humidity 80.0 90 > th dose dependent rect. 4 17
231 39.47 wind 1.0 14400 < th dose dependent rect. 21 10
257 39.52 wind 7.0 10 < th dose independent rect. 9 2
268 39.55 radiation 1.0 270 < th dose independent rect. 2 16
271 39.55 radiation 40.0 90 < th dose independent rect. 11 21
273 39.55 wind 9.0 10 < th dose dependent rect. 9 2
274 39.55 radiation 1.0 90 > th dose dependent rect. 8 2
285 39.57 radiation 1.0 270 > th dose independent rect. 6 4
287 39.57 humidity 80.0 10 < th dose independent rect. 8 6
326 39.62 wind 9.0 30 < th dose dependent rect. 9 17
328 39.63 radiation 10.0 270 > th dose independent sin 11 NA
329 39.63 temperature 10.0 10 > th dose independent rect. 9 2
331 39.63 humidity 50.0 10 > th dose independent rect. 9 2
332 39.63 atmosphere 995.0 10 > th dose independent rect. 9 2
333 39.63 atmosphere 1015.0 10 < th dose independent rect. 9 2
334 39.63 radiation 1.0 10 > th dose independent rect. 9 2
335 39.63 precipitation 0.1 10 < th dose independent rect. 9 2
340 39.63 precipitation 0.1 10 < th dose independent rect. 11 22
341 39.63 precipitation 0.1 10 < th dose dependent rect. 9 2
345 39.63 precipitation 0.1 10 < th dose dependent rect. 11 22
351 39.64 temperature 10.0 90 > th dose dependent rect. 8 15
356 39.65 radiation 1.0 270 > th dose dependent rect. 6 4
363 39.66 wind 1.0 90 > th dose independent rect. 8 3
378 39.67 atmosphere 995.0 90 > th dose independent rect. 11 21
380 39.67 radiation 40.0 270 < th dose dependent sin 11 NA
385 39.67 humidity 70.0 30 > th dose dependent rect. 2 16
389 39.68 wind 9.0 90 < th dose independent rect. 11 21
398 39.69 temperature 10.0 1440 > th dose independent rect. 10 2
401 39.69 atmosphere 995.0 1440 > th dose independent rect. 10 2
407 39.69 wind 7.0 10 < th dose independent rect. 2 6
410 39.69 temperature 10.0 1440 > th dose independent rect. 12 22
423 39.70 wind 1.0 14400 < th dose dependent sin 10 NA
433 39.71 wind 3.0 10 < th dose independent rect. 9 4
444 39.71 temperature 10.0 30 > th dose dependent rect. 2 6
480 39.74 precipitation 0.1 30 < th dose independent rect. 2 6
485 39.74 precipitation 0.1 30 < th dose dependent rect. 2 6
492 39.75 wind 3.0 14400 < th dose independent rect. 21 1
495 39.75 precipitation 0.1 30 < th dose independent rect. 8 18
505 39.75 precipitation 0.1 30 < th dose dependent rect. 8 18
508 39.76 wind 3.0 720 > th dose independent rect. 10 2
528 39.77 humidity 50.0 270 > th dose independent rect. 10 21
537 39.78 wind 9.0 1440 < th dose independent rect. 3 6
538 39.78 temperature 10.0 1440 > th dose independent rect. 3 6
541 39.78 humidity 50.0 1440 > th dose independent rect. 3 6
543 39.78 atmosphere 995.0 1440 > th dose independent rect. 3 6
545 39.78 temperature 10.0 1440 > th dose independent rect. 9 18
550 39.78 radiation 1.0 270 > th dose dependent sin 11 NA
552 39.78 temperature 25.0 720 > th dose dependent rect. 21 9
555 39.79 humidity 80.0 10 < th dose independent rect. 2 12
563 39.79 wind 5.0 10 < th dose dependent rect. 8 5
589 39.81 temperature 10.0 30 > th dose independent rect. 2 6
591 39.81 temperature 30.0 30 < th dose independent rect. 2 6
592 39.81 humidity 50.0 30 > th dose independent rect. 2 6
595 39.81 atmosphere 1015.0 30 < th dose independent rect. 2 6
601 39.81 temperature 10.0 30 > th dose independent rect. 8 18
604 39.81 wind 7.0 270 < th dose independent rect. 5 21
609 39.81 wind 9.0 30 < th dose dependent rect. 2 7
623 39.82 atmosphere 995.0 10 > th dose independent rect. 11 22
630 39.82 radiation 1.0 270 < th dose dependent rect. 2 16
632 39.83 wind 3.0 14400 > th dose independent rect. 21 1
638 39.83 radiation 1.0 720 < th dose independent rect. 19 13
667 39.84 wind 1.0 14400 < th dose dependent rect. 1 2
672 39.84 humidity 60.0 30 > th dose dependent rect. 2 14
686 39.85 humidity 70.0 30 > th dose independent rect. 13 19
699 39.85 radiation 40.0 270 < th dose dependent rect. 11 19
702 39.86 temperature 25.0 720 > th dose independent rect. 21 5
704 39.86 radiation 40.0 30 < th dose independent rect. 2 6
710 39.86 atmosphere 1015.0 90 < th dose independent rect. 11 21
742 39.87 temperature 10.0 10 > th dose dependent rect. 9 2
743 39.87 temperature 10.0 720 > th dose dependent rect. 19 3
754 39.88 radiation 1.0 270 > th dose independent sin 3 NA
768 39.88 temperature 30.0 90 < th dose independent rect. 13 19
770 39.88 humidity 80.0 30 > th dose independent rect. 2 23
797 39.90 wind 7.0 90 < th dose independent rect. 8 20
811 39.91 precipitation 0.1 270 < th dose independent rect. 21 13
821 39.91 precipitation 0.1 270 < th dose dependent rect. 21 13
826 39.92 radiation 1.0 270 < th dose independent sin 3 NA
842 39.92 wind 5.0 14400 < th dose dependent rect. 21 1
850 39.92 humidity 90.0 90 < th dose dependent rect. 1 10
859 39.93 precipitation 0.1 4320 < th dose independent rect. 19 1
861 39.93 humidity 80.0 1440 < th dose independent rect. 11 2
867 39.93 humidity 50.0 270 > th dose independent rect. 21 13
871 39.93 temperature 15.0 90 > th dose independent rect. 13 19
873 39.93 radiation 1.0 270 < th dose independent rect. 22 23
876 39.93 precipitation 0.1 4320 < th dose dependent rect. 19 1
899 39.94 temperature 10.0 270 > th dose independent rect. 10 11
900 39.94 temperature 10.0 270 > th dose independent rect. 21 13
901 39.94 atmosphere 995.0 270 > th dose independent rect. 21 13
922 39.95 radiation 20.0 90 > th dose independent rect. 8 2
945 39.95 humidity 90.0 720 < th dose dependent rect. 8 2
949 39.95 wind 1.0 14400 < th dose dependent rect. 24 12
967 39.96 wind 1.0 14400 < th dose independent rect. 19 14
971 39.96 atmosphere 995.0 30 > th dose independent rect. 8 18
972 39.96 atmosphere 1005.0 10 > th dose independent rect. 13 19