BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0540500 Os08g0540500|AK106511
         (315 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51130.1  | chr5:20781896-20783901 FORWARD LENGTH=319          282   2e-76

>AT5G51130.1 | chr5:20781896-20783901 FORWARD LENGTH=319
          Length = 318

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 172/244 (70%), Gaps = 2/244 (0%)

Query: 66  IDRNVDEDPRLKIFKREWFESKDCLDIGCNQGLVTIGLAAKFKCQSILGVDIDSGLIETA 125
           I  + DEDPRLK+ K+EWFE KDCLDIGCN G++TI +A KF C+SILGVDID+  IE A
Sbjct: 75  ISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIHIAKKFGCRSILGVDIDTSRIEDA 134

Query: 126 NWNLRRMSRLDKVVVENTKAHKSSDSPSESCPEKVAPEISNGDISNGSHH--DIFKVVSF 183
           +W+LR+  R+      + K   S  +      ++ +  +SNG+    S    D+ ++VSF
Sbjct: 135 HWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSVSLSNGEAKADSAETKDLSQIVSF 194

Query: 184 RRENFVDSMCTSSEQYDTIVCLSVTKWIHLNWGDDGIITLFVKIWRLLRPGGVFIMEPQP 243
           ++ENFV +      +YDTI+CLSVTKW+HLNWGDDG+ITLF KIWRLL+PGG+F+MEPQP
Sbjct: 195 QKENFVQTRNLDDNRYDTILCLSVTKWVHLNWGDDGLITLFSKIWRLLQPGGIFVMEPQP 254

Query: 244 WTSYRRNRLVSEVAKENFNTILIHPDKFREILLDKIGFRSVEVVTDKLEGAVTGFDRPIE 303
           W SY  NR VSE    N+ TI++ PD+F+EILLDKIGFR+VE +T  L GA  GFDR I 
Sbjct: 255 WKSYENNRRVSETTAMNYRTIVLRPDRFQEILLDKIGFRTVEDLTSSLSGASKGFDRQIL 314

Query: 304 VYHK 307
            + K
Sbjct: 315 AFQK 318



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,124,215
Number of extensions: 245166
Number of successful extensions: 675
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)