Os08g0540100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0540100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.54 | 0.272 | 11.1 | 0.144 | 0.606 | 0.437 | 0.5 | -1.34 | -0.243 | 20.2 | 20.52 | 816 | -- | -- |
| 38.03 | 0.287 | 11.1 | 0.37 | 0.607 | 0.596 | 0.151 | -- | -0.209 | 20.2 | 20.5 | 942 | -- | -- |
| 34.21 | 0.272 | 11.1 | 0.157 | 0.604 | 0.452 | -- | -1.18 | -0.236 | 20.2 | 20.5 | 842 | -- | -- |
| 34.78 | 0.275 | 11.1 | 0.168 | 0.635 | 0.939 | -- | -- | -0.228 | 20 | 18.5 | 2387 | -- | -- |
| 53.89 | 0.342 | 11 | 0.115 | -- | 0.55 | -- | -1.08 | -0.217 | -- | 20.6 | 795 | -- | -- |
| 47.68 | 0.324 | 11 | 0.605 | 0.659 | -- | 0.106 | -- | -0.0596 | 20.5 | -- | -- | -- | -- |
| 47.72 | 0.323 | 11 | 0.602 | 0.659 | -- | -- | -- | -0.0596 | 20.5 | -- | -- | -- | -- |
| 56.5 | 0.35 | 11 | 0.284 | -- | 0.988 | -- | -- | -0.197 | -- | 18.73 | 713 | -- | -- |
| 35.41 | 0.277 | 11.1 | -- | 0.641 | 1.02 | -- | -- | -0.256 | 20.1 | 18.6 | 2401 | -- | -- |
| 72 | 0.396 | 11 | 0.599 | -- | -- | -- | -- | -0.066 | -- | -- | -- | -- | -- |
| 57.26 | 0.354 | 11 | -- | 0.657 | -- | -- | -- | -0.127 | 20.6 | -- | -- | -- | -- |
| 57.39 | 0.353 | 11 | -- | -- | 1.11 | -- | -- | -0.289 | -- | 18.3 | 2256 | -- | -- |
| 81.45 | 0.421 | 11 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 2 | 33.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 5 | 33.83 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 6 | 33.85 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 20 |
| 17 | 34.03 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 31 | 34.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 73 | 34.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 78 | 34.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 87 | 34.37 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 22 |
| 91 | 34.38 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 99 | 34.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 111 | 34.43 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 139 | 34.50 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 150 | 34.53 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 185 | 34.60 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 214 | 34.65 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 246 | 34.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 249 | 34.71 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 250 | 34.71 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 258 | 34.74 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 260 | 34.74 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 275 | 34.76 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 276 | 34.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 299 | 34.80 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 305 | 34.80 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 308 | 34.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 313 | 34.82 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 337 | 34.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 354 | 34.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 357 | 34.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 374 | 34.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 411 | 34.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 413 | 34.96 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 416 | 34.97 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 10 |
| 442 | 35.00 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 444 | 35.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 478 | 35.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 497 | 35.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 532 | 35.15 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 533 | 35.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 579 | 35.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 590 | 35.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 600 | 35.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 601 | 35.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 627 | 35.26 | humidity | 50 | 43200 | < th | dose dependent | rect. | 15 | 18 |
| 679 | 35.30 | humidity | 50 | 43200 | < th | dose dependent | rect. | 15 | 21 |
| 687 | 35.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 715 | 35.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 716 | 35.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 717 | 35.33 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 747 | 35.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 754 | 35.35 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 762 | 35.36 | radiation | 10 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 764 | 35.36 | humidity | 50 | 43200 | < th | dose dependent | sin | 17 | NA |
| 766 | 35.36 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 804 | 35.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 809 | 35.38 | humidity | 50 | 43200 | < th | dose dependent | sin | 11 | NA |
| 859 | 35.40 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 861 | 35.40 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 907 | 35.41 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 914 | 35.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 918 | 35.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 921 | 35.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 957 | 35.43 | radiation | 10 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 958 | 35.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 985 | 35.43 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 16 |