Os08g0538600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Stress up-regulated Nod 19 family protein.
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Os08g0538600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Stress up-regulated Nod 19 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.57 | 0.492 | 10.8 | 1.2 | 0.692 | -1.4 | 0.29 | 11.4 | -0.287 | 13.1 | 25.8 | 3703 | -- | -- |
| 131.21 | 0.534 | 11.1 | -1.08 | 0.709 | -0.555 | 0.0131 | -- | -0.619 | 12.5 | 17.11 | 8192 | -- | -- |
| 109.85 | 0.488 | 10.8 | 1.22 | 0.694 | -1.44 | -- | 11.6 | -0.3 | 13.1 | 26 | 3703 | -- | -- |
| 130.51 | 0.532 | 11.1 | -0.994 | 0.71 | -0.668 | -- | -- | -0.588 | 12.7 | 10.39 | 8346 | -- | -- |
| 138.73 | 0.549 | 10.8 | 1.29 | -- | -1.58 | -- | 11.6 | -0.274 | -- | 25.69 | 3688 | -- | -- |
| 137.83 | 0.55 | 11.1 | -1.35 | 0.747 | -- | 0.0749 | -- | -0.783 | 12.8 | -- | -- | -- | -- |
| 137.85 | 0.55 | 11.1 | -1.34 | 0.747 | -- | -- | -- | -0.783 | 12.8 | -- | -- | -- | -- |
| 157.74 | 0.588 | 11.1 | -1.48 | -- | 0.812 | -- | -- | -0.83 | -- | 25.69 | 3688 | -- | -- |
| 142.94 | 0.557 | 11 | -- | 0.687 | -1.04 | -- | -- | -0.342 | 12.7 | 9.209 | 24335 | -- | -- |
| 172.72 | 0.614 | 11.1 | -1.37 | -- | -- | -- | -- | -0.797 | -- | -- | -- | -- | -- |
| 185.46 | 0.637 | 11.1 | -- | 0.768 | -- | -- | -- | -0.633 | 12.9 | -- | -- | -- | -- |
| 174.4 | 0.615 | 11 | -- | -- | -1.14 | -- | -- | -0.326 | -- | 6.689 | 24079 | -- | -- |
| 222.32 | 0.696 | 11.1 | -- | -- | -- | -- | -- | -0.645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.54 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 14 | 104.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 15 | 104.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 16 | 104.34 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 17 | 104.38 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 18 | 104.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 20 | 104.95 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 22 | 105.07 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 68 | 105.26 | radiation | 20 | 43200 | > th | dose independent | sin | 8 | NA |
| 88 | 105.36 | radiation | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 127 | 105.57 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 130 | 105.60 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 131 | 105.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 133 | 105.63 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 135 | 105.68 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 156 | 105.73 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 158 | 105.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 178 | 105.86 | radiation | 10 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 227 | 106.05 | radiation | 10 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 229 | 106.06 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 251 | 106.10 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 253 | 106.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 274 | 106.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 275 | 106.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 279 | 106.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 280 | 106.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 293 | 106.23 | radiation | 40 | 43200 | > th | dose independent | sin | 6 | NA |
| 299 | 106.24 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 313 | 106.28 | radiation | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 425 | 106.40 | radiation | 30 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 450 | 106.41 | radiation | 30 | 43200 | < th | dose dependent | rect. | 23 | 14 |
| 455 | 106.42 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 596 | 106.43 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 599 | 106.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 625 | 106.49 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 750 | 106.64 | radiation | 30 | 43200 | < th | dose dependent | sin | 5 | NA |
| 783 | 106.66 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 19 |