BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0538600 Os08g0538600|AK067831
         (424 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61820.1  | chr5:24834505-24836223 REVERSE LENGTH=476          427   e-120

>AT5G61820.1 | chr5:24834505-24836223 REVERSE LENGTH=476
          Length = 475

 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/397 (54%), Positives = 278/397 (70%), Gaps = 27/397 (6%)

Query: 32  LKSKTFLSPAFFLHPGSVSNKFYYDVPFPRGHLALKSFNAEVVDENGVPVPLHDTYLHHW 91
           +KS  F SP   ++PGSV+N + +D+ FPRGH+ LK+F+AEVVDE G PVPLH+TYLHHW
Sbjct: 34  IKSAVFYSPKLVMNPGSVANPYLFDIDFPRGHIGLKAFDAEVVDEAGKPVPLHETYLHHW 93

Query: 92  VVEPYYALKNS---------DSADAQKLPKG--------IIARNSGVCKK-TLGQYYGLG 133
           +VEPYY  K S         +   +++ P+         I+ +N G+C+  TL  ++GLG
Sbjct: 94  IVEPYYVRKGSKLPQREMFRNHGFSREDPESNLDSKSDIILVKNGGLCRSLTLRHFFGLG 153

Query: 134 SETRHTATWVPDPYGIEIGNPEKPPEGYEEKWLINVHAIDTRGAIDKLGCTECKCDLYNM 193
           SETR T+T+VPDPY IEIGNPE+ P+GYE KWL+N+HAIDTRG  DK GC EC CDLYN+
Sbjct: 154 SETRETSTYVPDPYAIEIGNPEETPDGYEFKWLLNIHAIDTRGVEDKKGCIECLCDLYNV 213

Query: 194 TIDEYGRKLPKDYIGGLYCCYDETQCKVKEGF-NGE-LRKLFLRYTVTWLDWSDAVVPVK 251
           TIDEYGR +   Y GGLYCCYD+TQC+VK GF NGE  R L+L+YTV W+DW  +V+P K
Sbjct: 214 TIDEYGRAIRPGYKGGLYCCYDKTQCRVKSGFDNGEKTRTLYLKYTVRWVDWDSSVLPAK 273

Query: 252 IYIFDVTDT--SPPDEKSGTACKVEYQVEECSPENRAKNECIDVKVTKEVIPCGGDIVFG 309
           +YIFDVTD+      +     C VEY+V+ C       + C+DVK    V+P  G IV+G
Sbjct: 274 VYIFDVTDSWERSKGDSQEHICHVEYEVKPCKTNG---DGCVDVKKKSLVMPFDGYIVYG 330

Query: 310 VAHQHSGGIGASLHGQDGRLLCASIPSYGKGEEAGNEDNYIVGMSTCYPKPGSVKVSDGE 369
           VAHQH+GGIG +L+ ++G  +CAS+P YG G+E GNE  YIVGMS+CYP    VKVS GE
Sbjct: 331 VAHQHAGGIGGALYRENGEGICASMPKYGNGDEPGNEAGYIVGMSSCYPA-DPVKVSYGE 389

Query: 370 VLTVVSNYSSDRQHTGVMGLLYILVAEQEQPAPKPAL 406
            LT+ SNYS+   HTGVMGL YILVA Q+ P P  +L
Sbjct: 390 TLTLESNYSNAVGHTGVMGLFYILVA-QQLPEPDSSL 425



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,594,391
Number of extensions: 505501
Number of successful extensions: 905
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)