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Os08g0538000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0253) R2 : 0.814
β1 : 0.82 (0.0927) R2dD : 0.033 R2D : 0.0273
β2 : 4.65 (0.107) R2dC : 2.24 R2C : -0.418
β3 : 2.96 (0.0936) R2dE : 1.19 R2E : -1.44
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.125 (0.0543) R2dN8 : 0.00294 R2N8 : -0.00797
σ : 0.473
deviance : 103.29
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_____
C
peak time of C : 15
E
wheather : radiation
threshold : 12.58
memory length : 25
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.6 0.476 11.7 0.793 4.46 2.7 0.995 0.892 0.119 15.1 10.77 30 5.08 --
103.38 0.474 11.7 0.801 4.57 2.87 0.154 -- 0.105 15 12.58 25 5.21 --
104.12 0.475 11.7 0.805 4.4 2.71 -- 0.546 0.138 15.1 11.43 30 5.32 --
103.29 0.473 11.7 0.82 4.65 2.96 -- -- 0.125 15 12.58 25 5.2 --
146.69 0.564 11.7 0.759 -- 2.83 -- -0.0129 -0.028 -- 271.9 130 13.4 --
136.55 0.548 11.8 0.815 2.78 -- 0.329 -- -0.00898 17.7 -- -- -- --
136.81 0.548 11.7 0.813 2.78 -- -- -- -0.0076 17.7 -- -- -- --
136.82 0.545 11.7 0.805 -- 2.79 -- -- -0.00428 -- 4097 437 15.9 --
120.88 0.512 11.7 -- 4.65 2.98 -- -- 0.0374 15 12.47 25 5.18 --
538.73 1.08 11.7 0.726 -- -- -- -- -0.0734 -- -- -- -- --
154.25 0.581 11.8 -- 2.77 -- -- -- -0.0982 17.8 -- -- -- --
154.32 0.579 11.7 -- -- 2.78 -- -- -0.0952 -- 4650 420 15.8 --
552.65 1.1 11.7 -- -- -- -- -- -0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.05 wind 5.0 270 < th dose independent rect. 3 4
2 96.19 temperature 10.0 270 > th dose dependent rect. 3 4
3 96.49 precipitation 0.1 270 < th dose independent rect. 3 4
4 96.49 precipitation 0.1 270 < th dose dependent rect. 3 4
5 96.57 temperature 10.0 30 > th dose dependent rect. 4 5
7 97.00 wind 9.0 270 < th dose independent rect. 7 20
11 97.73 radiation 30.0 90 < th dose independent rect. 4 5
12 97.81 wind 9.0 270 < th dose dependent rect. 3 4
13 97.85 wind 5.0 30 < th dose independent rect. 4 5
16 97.95 temperature 10.0 270 > th dose independent rect. 3 4
18 97.95 temperature 30.0 270 < th dose independent rect. 3 4
19 97.95 humidity 50.0 270 > th dose independent rect. 3 4
21 97.95 atmosphere 995.0 270 > th dose independent rect. 3 4
22 97.95 atmosphere 1015.0 270 < th dose independent rect. 3 4
25 97.95 temperature 10.0 270 > th dose independent rect. 7 20
30 98.10 radiation 40.0 270 < th dose dependent rect. 3 4
37 98.80 temperature 10.0 270 > th dose dependent rect. 4 2
41 99.03 wind 9.0 30 < th dose independent rect. 9 19
43 99.04 precipitation 0.1 30 < th dose independent rect. 4 5
44 99.04 precipitation 0.1 30 < th dose dependent rect. 4 5
47 99.17 temperature 10.0 30 > th dose independent rect. 4 5
50 99.17 humidity 50.0 30 > th dose independent rect. 4 5
52 99.17 atmosphere 995.0 30 > th dose independent rect. 4 5
53 99.17 atmosphere 1015.0 30 < th dose independent rect. 4 5
54 99.17 temperature 10.0 30 > th dose independent rect. 9 19
56 99.20 temperature 15.0 270 > th dose independent rect. 12 10
61 99.35 precipitation 0.1 270 < th dose independent rect. 7 20
62 99.35 precipitation 0.1 270 < th dose dependent rect. 7 20
89 99.83 wind 9.0 270 < th dose independent rect. 6 22
105 100.16 radiation 1.0 30 > th dose independent rect. 5 4
116 100.23 wind 9.0 270 < th dose dependent rect. 4 2
122 100.37 precipitation 0.1 30 < th dose independent rect. 9 19
124 100.37 precipitation 0.1 30 < th dose dependent rect. 9 19
134 100.73 humidity 50.0 270 > th dose dependent rect. 3 4
135 100.75 radiation 10.0 270 < th dose independent rect. 4 2
136 100.77 atmosphere 1010.0 270 < th dose independent rect. 4 2
141 100.84 precipitation 0.1 270 < th dose independent rect. 2 6
142 100.84 precipitation 0.1 270 < th dose dependent rect. 2 6
143 100.87 atmosphere 995.0 30 > th dose independent rect. 9 19
150 100.99 temperature 10.0 270 > th dose independent rect. 4 2
152 100.99 temperature 30.0 270 < th dose independent rect. 4 2
153 100.99 humidity 50.0 270 > th dose independent rect. 4 2
156 100.99 atmosphere 995.0 270 > th dose independent rect. 4 2
162 100.99 temperature 10.0 270 > th dose independent rect. 6 22
166 101.11 radiation 40.0 270 < th dose dependent rect. 4 2
211 101.56 atmosphere 1000.0 30 > th dose dependent rect. 4 5
214 101.63 radiation 1.0 270 < th dose dependent rect. 4 1
244 101.80 atmosphere 995.0 270 > th dose independent rect. 7 20
278 102.22 temperature 10.0 270 > th dose independent rect. 2 6
281 102.22 humidity 50.0 270 > th dose independent rect. 2 6
283 102.22 atmosphere 995.0 270 > th dose independent rect. 2 6
284 102.22 atmosphere 1015.0 270 < th dose independent rect. 2 6
363 102.81 humidity 50.0 270 > th dose dependent rect. 4 1
379 102.93 radiation 10.0 30 < th dose dependent sin 11 NA
386 103.00 temperature 15.0 270 > th dose independent rect. 14 17
390 103.06 humidity 50.0 30 > th dose independent rect. 9 19
395 103.12 humidity 50.0 270 > th dose dependent rect. 18 9
399 103.17 temperature 15.0 10 > th dose independent rect. 15 18
416 103.24 humidity 50.0 270 > th dose independent rect. 7 20
418 103.25 wind 1.0 270 > th dose independent rect. 3 4
438 103.42 temperature 10.0 1440 > th dose independent rect. 5 5
441 103.42 atmosphere 995.0 1440 > th dose independent rect. 5 5
442 103.42 atmosphere 1015.0 1440 < th dose independent rect. 5 5
443 103.42 temperature 10.0 1440 > th dose independent rect. 10 19
467 103.78 atmosphere 1000.0 270 > th dose dependent rect. 4 2
507 104.26 wind 9.0 270 < th dose independent rect. 22 14
513 104.38 radiation 1.0 90 < th dose independent sin 11 NA
532 104.46 atmosphere 1010.0 270 < th dose independent rect. 12 10
539 104.49 temperature 10.0 270 > th dose independent rect. 22 14
540 104.49 atmosphere 995.0 270 > th dose independent rect. 22 14
545 104.52 atmosphere 1015.0 30 < th dose independent rect. 9 19
546 104.54 radiation 1.0 90 > th dose independent sin 11 NA
550 104.56 wind 7.0 270 < th dose independent rect. 17 10
573 104.78 precipitation 0.1 270 < th dose independent rect. 3 15
574 104.78 precipitation 0.1 270 < th dose dependent rect. 3 15
579 104.82 radiation 1.0 30 > th dose independent rect. 15 18
616 105.22 humidity 90.0 10 < th dose independent rect. 5 4
636 105.43 humidity 50.0 270 > th dose independent rect. 22 14
640 105.49 humidity 90.0 10 < th dose independent rect. 2 7
642 105.54 precipitation 0.1 270 < th dose independent rect. 12 10
644 105.54 precipitation 0.1 270 < th dose dependent rect. 12 10
648 105.62 humidity 90.0 10 < th dose independent rect. 14 19
690 106.00 wind 9.0 90 < th dose dependent rect. 9 19
697 106.07 radiation 30.0 270 < th dose dependent rect. 17 10
710 106.19 wind 1.0 270 > th dose independent rect. 12 10
711 106.19 radiation 10.0 270 < th dose independent rect. 17 10
726 106.28 radiation 30.0 90 < th dose independent rect. 15 18
734 106.31 atmosphere 1005.0 270 > th dose independent rect. 3 4
756 106.48 temperature 10.0 270 > th dose independent rect. 17 10
760 106.48 temperature 10.0 270 > th dose independent rect. 3 14
761 106.48 atmosphere 1015.0 270 < th dose independent rect. 3 14
786 106.50 humidity 50.0 270 > th dose independent rect. 18 9
795 106.53 atmosphere 995.0 270 > th dose independent rect. 18 9
826 106.72 precipitation 0.1 270 < th dose independent rect. 18 9
828 106.72 precipitation 0.1 270 < th dose dependent rect. 18 9
843 106.80 precipitation 0.1 270 < th dose independent rect. 22 14
844 106.80 precipitation 0.1 10 < th dose independent rect. 15 18
846 106.80 precipitation 0.1 270 < th dose dependent rect. 22 14
847 106.80 precipitation 0.1 10 < th dose dependent rect. 15 18
855 106.84 wind 9.0 270 < th dose independent rect. 12 10
884 106.96 wind 9.0 270 < th dose dependent rect. 7 20
889 107.02 atmosphere 1015.0 30 < th dose dependent rect. 4 5
891 107.04 atmosphere 1005.0 270 > th dose independent rect. 4 2
893 107.06 atmosphere 1005.0 30 > th dose independent rect. 4 5
895 107.07 atmosphere 1015.0 270 < th dose independent rect. 7 20
923 107.17 temperature 10.0 10 > th dose dependent rect. 15 18
924 107.18 wind 1.0 30 > th dose independent rect. 9 6
946 107.37 precipitation 0.1 270 < th dose independent rect. 14 17
947 107.37 precipitation 0.1 270 < th dose dependent rect. 14 17
950 107.43 temperature 10.0 10 > th dose independent rect. 9 6
952 107.43 atmosphere 995.0 10 > th dose independent rect. 9 6
953 107.43 atmosphere 1015.0 10 < th dose independent rect. 9 6
954 107.43 precipitation 0.1 10 < th dose independent rect. 9 6
957 107.43 precipitation 0.1 10 < th dose dependent rect. 9 6
958 107.45 radiation 1.0 10 > th dose independent rect. 9 6
971 107.58 wind 9.0 10 < th dose independent rect. 9 6
986 107.63 wind 9.0 270 < th dose independent rect. 7 7
994 107.69 temperature 10.0 1440 > th dose independent rect. 10 6
998 107.69 temperature 10.0 1440 > th dose independent rect. 16 18