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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0527400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0399) R2 : 0.113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.84 (0.126) R2dE : 0.0872 R2E : 0.0732
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.334 (0.0842) R2dN8 : 0.0397 R2N8 : 0.0257
σ : 0.75
deviance : 259.6
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 172
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 1.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.96 0.75 3.06 0.0316 0.284 0.883 0.522 0.875 0.305 2.72 1005 271 11.1 1.07
256.63 0.746 3.06 0.078 0.301 0.86 0.0581 -- 0.317 2.75 1005 270 11.2 0.917
255.57 0.745 3.06 0.0301 0.294 0.891 -- 0.593 0.304 2.74 1005 268 11.1 1.12
256.6 0.746 3.06 0.0561 0.291 0.851 -- -- 0.317 2.7 1005 271 11.2 0.917
258.61 0.749 3.06 0.0355 -- 0.915 -- 0.654 0.329 -- 1005 164 11.1 1.34
282.26 0.788 3.06 0.0114 0.21 -- -0.0654 -- 0.31 12.1 -- -- -- --
282.28 0.787 3.06 0.0087 0.21 -- -- -- 0.31 12 -- -- -- --
259.53 0.75 3.05 0.0529 -- 0.858 -- -- 0.337 -- 1005 169 11.1 1.3
256.69 0.746 3.06 -- 0.29 0.849 -- -- 0.309 2.71 1005 271 11.2 0.916
285.06 0.789 3.06 0.00219 -- -- -- -- 0.307 -- -- -- -- --
282.28 0.786 3.06 -- 0.21 -- -- -- 0.309 12 -- -- -- --
259.6 0.75 3.05 -- -- 0.84 -- -- 0.334 -- 1005 172 11.1 1.33
285.06 0.788 3.06 -- -- -- -- -- 0.307 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.70 atmosphere 1005.0 270 > th dose independent rect. 11 1
2 259.20 atmosphere 1005.0 270 > th dose independent rect. 10 3
6 260.64 atmosphere 1005.0 30 > th dose independent rect. 11 5
14 262.87 humidity 80.0 90 > th dose independent rect. 10 5
19 263.30 radiation 10.0 270 < th dose dependent rect. 8 5
23 263.64 humidity 50.0 90 > th dose dependent rect. 11 4
27 263.75 atmosphere 1000.0 90 > th dose dependent rect. 11 5
36 264.30 atmosphere 1000.0 270 > th dose dependent rect. 11 2
37 264.34 humidity 80.0 270 > th dose dependent rect. 10 1
39 264.35 wind 9.0 30 < th dose dependent rect. 6 14
61 265.11 wind 7.0 30 < th dose independent rect. 6 14
68 265.23 radiation 30.0 270 < th dose dependent rect. 9 2
87 265.75 wind 3.0 30 < th dose independent rect. 6 10
100 265.90 wind 3.0 90 < th dose dependent rect. 10 5
101 265.90 wind 5.0 30 < th dose dependent rect. 6 11
105 266.02 wind 3.0 30 < th dose dependent rect. 6 9
124 266.33 wind 3.0 30 < th dose independent rect. 6 14
125 266.36 wind 9.0 30 > th dose dependent rect. 11 1
127 266.37 radiation 20.0 270 < th dose independent rect. 9 2
131 266.43 wind 3.0 90 < th dose dependent sin 22 NA
158 266.52 radiation 20.0 270 < th dose independent rect. 9 4
160 266.54 wind 1.0 10 < th dose independent rect. 11 2
170 266.60 temperature 30.0 30 < th dose dependent rect. 12 1
173 266.62 radiation 40.0 270 < th dose dependent rect. 9 4
174 266.64 wind 1.0 90 > th dose independent rect. 5 14
177 266.71 temperature 10.0 10 > th dose dependent rect. 6 14
195 266.86 humidity 70.0 10 > th dose independent rect. 12 1
212 267.04 atmosphere 995.0 30 > th dose dependent rect. 11 19
225 267.19 wind 7.0 10 < th dose dependent rect. 6 5
236 267.30 temperature 30.0 270 < th dose dependent rect. 10 3
238 267.32 wind 3.0 90 < th dose dependent rect. 10 9
250 267.39 wind 5.0 10 < th dose independent rect. 6 5
255 267.43 radiation 20.0 270 < th dose dependent rect. 8 21
262 267.49 wind 9.0 30 > th dose dependent rect. 19 17
272 267.56 temperature 30.0 90 < th dose dependent rect. 10 6
282 267.61 wind 1.0 10 < th dose dependent rect. 11 2
297 267.67 radiation 1.0 90 < th dose dependent rect. 19 22
308 267.74 radiation 1.0 90 < th dose independent rect. 19 22
312 267.76 wind 9.0 30 < th dose dependent rect. 5 23
332 267.89 wind 9.0 30 > th dose independent rect. 11 1
347 267.94 temperature 30.0 270 < th dose dependent rect. 11 1
358 267.99 wind 9.0 30 > th dose dependent sin 6 NA
369 268.06 wind 1.0 10 > th dose independent rect. 6 14
375 268.11 wind 1.0 90 < th dose independent rect. 11 2
389 268.22 precipitation 0.1 270 > th dose independent rect. 8 2
391 268.22 wind 3.0 30 < th dose independent rect. 6 17
392 268.22 precipitation 0.1 270 > th dose dependent rect. 8 2
412 268.32 atmosphere 995.0 30 > th dose dependent rect. 6 5
443 268.44 wind 3.0 30 > th dose independent rect. 9 7
462 268.47 wind 3.0 30 < th dose dependent rect. 6 17
483 268.57 wind 7.0 90 < th dose independent rect. 15 20
485 268.58 wind 3.0 30 > th dose independent rect. 9 13
516 268.62 temperature 25.0 10 > th dose independent rect. 6 14
526 268.67 atmosphere 1015.0 90 < th dose independent rect. 15 20
528 268.68 wind 3.0 30 < th dose independent sin 23 NA
534 268.72 temperature 25.0 10 > th dose independent rect. 24 6
541 268.74 radiation 20.0 270 < th dose independent rect. 8 21
581 268.88 radiation 40.0 270 < th dose dependent sin 12 NA
614 268.99 temperature 25.0 10 > th dose dependent rect. 1 5
621 269.01 humidity 50.0 30 > th dose dependent rect. 11 19
622 269.01 radiation 1.0 90 > th dose dependent rect. 15 20
641 269.12 atmosphere 1000.0 30 > th dose independent rect. 6 5
642 269.12 radiation 1.0 270 > th dose dependent sin 12 NA
667 269.20 radiation 10.0 90 < th dose dependent rect. 19 11
676 269.25 wind 1.0 30 > th dose dependent rect. 9 7
677 269.25 radiation 10.0 90 < th dose dependent rect. 19 16
691 269.31 radiation 1.0 90 < th dose independent rect. 19 11
696 269.33 humidity 80.0 90 > th dose independent rect. 10 20
697 269.33 radiation 1.0 90 > th dose independent rect. 13 22
700 269.34 wind 3.0 30 > th dose independent sin 23 NA
710 269.37 wind 9.0 30 < th dose independent sin 5 NA
711 269.37 wind 1.0 30 > th dose dependent rect. 9 13
719 269.40 radiation 1.0 90 > th dose independent rect. 15 20
753 269.52 temperature 30.0 90 < th dose independent rect. 11 4
754 269.52 wind 9.0 30 > th dose independent rect. 19 17
858 269.76 humidity 60.0 30 > th dose independent rect. 11 19
895 269.86 wind 1.0 90 > th dose independent rect. 5 6
899 269.87 wind 9.0 30 > th dose independent sin 5 NA
902 269.88 precipitation 0.1 720 > th dose independent rect. 6 1
904 269.88 precipitation 0.1 720 > th dose dependent rect. 6 1
911 269.89 radiation 20.0 270 < th dose independent rect. 9 18
922 269.92 precipitation 0.1 10 < th dose independent rect. 20 10
925 269.92 precipitation 0.1 10 < th dose dependent rect. 20 10
927 269.93 wind 7.0 10 < th dose independent rect. 16 19
936 269.95 temperature 15.0 90 > th dose independent rect. 6 13
944 269.96 wind 1.0 30 > th dose dependent rect. 4 12
949 269.97 precipitation 0.1 90 < th dose independent rect. 19 11
951 269.97 precipitation 0.1 90 < th dose dependent rect. 19 11
962 270.00 wind 1.0 30 > th dose dependent rect. 19 21
970 270.03 wind 3.0 30 < th dose independent rect. 6 22
976 270.04 precipitation 0.1 30 < th dose independent rect. 11 19
980 270.04 precipitation 0.1 30 < th dose dependent rect. 11 19
986 270.06 humidity 50.0 90 > th dose dependent rect. 19 20
990 270.08 wind 9.0 10 < th dose independent rect. 20 10
994 270.09 radiation 40.0 14400 < th dose independent rect. 16 13
995 270.09 temperature 10.0 90 > th dose dependent rect. 5 6