BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0527400 Os08g0527400|AK119389
(762 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04860.1 | chr1:1369306-1372290 REVERSE LENGTH=962 101 2e-21
AT2G32780.1 | chr2:13898431-13901870 REVERSE LENGTH=1084 99 1e-20
AT1G32850.1 | chr1:11902629-11906900 FORWARD LENGTH=893 55 2e-07
AT4G10590.2 | chr4:6538919-6543272 REVERSE LENGTH=911 54 5e-07
AT4G10570.1 | chr4:6523657-6528058 REVERSE LENGTH=924 52 1e-06
>AT1G04860.1 | chr1:1369306-1372290 REVERSE LENGTH=962
Length = 961
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 113/267 (42%), Gaps = 27/267 (10%)
Query: 124 MMVCVECDMHFCIGRFAKKSKPRGHIEEHAFDDGHPVALWYEDPYTGYCFECEDPLTIGG 183
+ +C+EC + C G + P+ H+ H+ H + + +E+P +CF C+ L +
Sbjct: 110 IWLCLECGCYVC-GGVGLPNGPQSHVLRHSRVTRHRLVIQWENPQLRWCFPCQ--LLLPV 166
Query: 184 EEGDKGMK----------VKGEEGCRASGSD-----SGHGCVIXXXXXXXXXXC------ 222
E+ D G K +KG + SD SG G +
Sbjct: 167 EKEDNGEKKDVLSEVVKLIKGRSLNNLASSDIEDQCSGSGSITSDIKLEGAVTSDIEARD 226
Query: 223 --AIRGIPNFGNTCYLNAVLQCLLVLGKLRARMSGPDAPPPSGMLGIILHDLFVATESVS 280
+RG+ N GNTC+ N+++Q LL L +LR + G L L LF T+ +
Sbjct: 227 GYVVRGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTETKPEA 286
Query: 281 YTRDLLDPVMLLGCVRHYKSEFQGNTMQDSHELLCCLRDSLIEEESKTRPDNMQQDAPSA 340
+ +++P G +F+G DSHELL CL DSL EES R D
Sbjct: 287 GLKSVINPRAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSDNDEK 346
Query: 341 VVPTVIDSIFRGQLFVTTLCKYCSFES 367
T+I+S+F G+ C C S
Sbjct: 347 ST-TLIESVFGGETSSIVSCMECGHSS 372
>AT2G32780.1 | chr2:13898431-13901870 REVERSE LENGTH=1084
Length = 1083
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 139/309 (44%), Gaps = 41/309 (13%)
Query: 113 DETCMCTERHLMMVCVECDMHFCIGRFAKKSKPRGHIEEHAFDDGHPVALWYEDPYTGYC 172
D+ C R+ + +C+EC + C G ++ + H+ H H + + ++P +C
Sbjct: 84 DQNCA---RNAIWLCLECGYYVC-GDVGLPTEAQSHVMGHNRLTRHRLVIQCKNPQLRWC 139
Query: 173 FECEDPLTIGGEE-GDKG------MKVKGEEG---------CRASGSDSGHGCVIXXXXX 216
F C+ L EE G+K +K+ E S S S +G +
Sbjct: 140 FSCQSLLPFDNEENGEKKDLLLEVVKLIRERSPNTYSASFETEFSCSGSIYGGI------ 193
Query: 217 XXXXXCAIRGIPNFGNTCYLNAVLQCLLVLGKLRARMSGPDAPPPSGMLGIILHDLFVAT 276
A+RG+ N GNTC+ N+V+Q LL L +LR D SG L L +LF +
Sbjct: 194 EARDGYAVRGLVNLGNTCFFNSVMQNLLSLDQLREHFLKEDL-SVSGPLVSSLKELFAES 252
Query: 277 ES-VSYTRDLLDPVMLLGCVRHYKSEFQGNTMQDSHELLCCLRDSLIEEESKTRPD---N 332
S S R+ ++P L V +F+G DSHELL CL D L EES R +
Sbjct: 253 NSEASVFRNEINPRDLFFSVCSQAPQFRGYQQHDSHELLRCLLDGLSIEESSLRKKLGVS 312
Query: 333 MQQDAPSAVVPTVIDSIFRGQLFVTTLCKYCS-FESVSQGSQDAFYDLCV-----ALPLQ 386
D+ + PT+IDS+F G++ T C C F V + F DL + LP +
Sbjct: 313 DSNDSSTYQKPTLIDSVFGGEISSTVSCLECGHFSKV----YEPFMDLSLPVPSMKLPPK 368
Query: 387 NERCISQQK 395
++ +SQ K
Sbjct: 369 KQQILSQAK 377
>AT1G32850.1 | chr1:11902629-11906900 FORWARD LENGTH=893
Length = 892
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 30/195 (15%)
Query: 223 AIRGIPNFGNTCYLNAVLQCL-----LVLGKLRARMSGPDAPPPSGM---LGIILHDLFV 274
+ G+ N GNTC++N+ LQCL +V L+ S +A P GM L I +L
Sbjct: 299 GLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLR 358
Query: 275 ATESVSYTRDLLDPVMLLGCVRHYKSEFQGNTMQDSHELLCCLRDSLIEEESKT------ 328
S ++ + P + + +F G DS E+L L D L E+ +K
Sbjct: 359 KLWSSG--QNTVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYI 416
Query: 329 -------RPDN----MQQDAPSAVVPTVIDSIFRGQLFVTTLCKYCSFESVSQGSQDAFY 377
RPD+ + A +VI +F+GQ T +C C S+ + D F
Sbjct: 417 EAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDCGKISI---TFDPFM 473
Query: 378 DLCVALPLQNERCIS 392
L + LP R ++
Sbjct: 474 YLSLPLPSSRTRSMT 488
>AT4G10590.2 | chr4:6538919-6543272 REVERSE LENGTH=911
Length = 910
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 106/275 (38%), Gaps = 49/275 (17%)
Query: 223 AIRGIPNFGNTCYLNAVLQCL-----LVLGKLRARMSGPDAPPPSGM---LGIILHDLFV 274
+ G+ N GNTC++N+ LQCL +V L+ + P GM L I DL
Sbjct: 301 GLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLK 360
Query: 275 ATESVSYTRDLLDPVMLLGCVRHYKSEFQGNTMQDSHELLCCLRDSLIEE---------- 324
S R+ + P + + +F G DS ELL L D L E+
Sbjct: 361 KLWSSG--RNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYI 418
Query: 325 ---ESKTRPDN----MQQDAPSAVVPTVIDSIFRGQLFVTTLCKYCSFESVSQGSQDAFY 377
+S +RPD+ + A +VI + +GQ T +C C S+ + D F
Sbjct: 419 ELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISI---TFDPFM 475
Query: 378 DLCVALPLQNERCIS-------------QQKIAIEQFPTIDKTNTEKIHAISGGSDPQVP 424
L V LP R ++ + + + +I T A D +
Sbjct: 476 YLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIRDLITALGTACLLAEDESLL 535
Query: 425 ASELGDMVMVKTSEPLVVDSNPLDQIAQSKDDVHC 459
+E+ D + K E NPLD ++ KDD H
Sbjct: 536 LAEVYDHKIFKYFE------NPLDSLSSIKDDEHI 564
>AT4G10570.1 | chr4:6523657-6528058 REVERSE LENGTH=924
Length = 923
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 30/195 (15%)
Query: 223 AIRGIPNFGNTCYLNAVLQCL-----LVLGKLRARMSGPDAPPPSGM---LGIILHDLFV 274
+ G+ N GNTC++N+ LQCL +V L+ + P GM L I DL
Sbjct: 302 GLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLK 361
Query: 275 ATESVSYTRDLLDPVMLLGCVRHYKSEFQGNTMQDSHELLCCLRDSLIEE---------- 324
S R+ + P + + +F G DS ELL L D L E+
Sbjct: 362 KLWSSG--RNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYI 419
Query: 325 ---ESKTRPDN----MQQDAPSAVVPTVIDSIFRGQLFVTTLCKYCSFESVSQGSQDAFY 377
+S +RPD+ + A +VI + +GQ T +C C S+ + D F
Sbjct: 420 ELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISI---TFDPFM 476
Query: 378 DLCVALPLQNERCIS 392
L V LP R ++
Sbjct: 477 YLSVPLPSTLTRSMT 491
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,398,328
Number of extensions: 709586
Number of successful extensions: 2096
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 5
Length of query: 762
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 656
Effective length of database: 8,200,473
Effective search space: 5379510288
Effective search space used: 5379510288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)