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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0527100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0481) R2 : 0.0889
β1 : 0.22 (0.176) R2dD : 0.00325 R2D : 0.00312
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.63 (0.377) R2dE : 0.0379 R2E : 0.0281
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.79 (1.29) R2dD*E : 0.0556 R2D*E : 0.0484
γ1 : 0.0693 (0.103) R2dN8 : 0.00122 R2N8 : -0.000232
σ : 0.899
deviance : 372.89
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 19.66
memory length : 77
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.5
open length of G : 1.88

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
371.5 0.906 3.15 0.243 0.0154 1.64 0.618 6.96 0.0698 22.1 18.81 78 12.3 1.88
390.61 0.92 3.13 0.328 0.0177 1.98 0.456 -- 0.117 21.2 7.489 66 12.2 2.25
372.84 0.899 3.15 0.229 0.0284 1.66 -- 6.77 0.0709 19.6 19.78 77 12.5 1.86
389.83 0.92 3.14 0.234 0.0207 2.66 -- -- 0.0774 21 7.75 61 12.6 1.71
372.89 0.899 3.15 0.22 -- 1.63 -- 6.79 0.0693 -- 19.66 77 12.5 1.88
405.98 0.945 3.15 0.25 0.0952 -- 0.703 -- 0.0528 18.2 -- -- -- --
406.74 0.944 3.15 0.245 0.131 -- -- -- 0.0566 15.5 -- -- -- --
389.86 0.92 3.14 0.234 -- 2.67 -- -- 0.0776 -- 7.723 61 12.6 1.89
388.47 0.918 3.14 -- 0.000376 2.59 -- -- 0.0936 19.8 7.823 61 12.6 0.683
407.7 0.943 3.15 0.239 -- -- -- -- 0.0531 -- -- -- -- --
408.32 0.945 3.15 -- 0.126 -- -- -- 0.0293 15.5 -- -- -- --
388.41 0.918 3.15 -- -- 2.51 -- -- 0.0827 -- 7.787 61 12.6 0.656
409.21 0.944 3.15 -- -- -- -- -- 0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.69 radiation 20.0 90 < th dose independent rect. 12 2
5 373.60 radiation 30.0 90 < th dose dependent rect. 12 2
6 373.61 radiation 1.0 270 < th dose dependent rect. 6 2
10 374.14 atmosphere 1005.0 270 < th dose independent rect. 6 1
21 375.46 radiation 20.0 90 < th dose independent rect. 12 16
23 375.57 temperature 20.0 270 < th dose independent rect. 6 1
24 375.87 humidity 80.0 10 > th dose independent rect. 12 3
28 376.01 humidity 80.0 10 > th dose dependent rect. 12 2
35 376.16 humidity 70.0 10 > th dose dependent rect. 14 1
47 376.41 atmosphere 1005.0 90 < th dose independent rect. 6 4
85 377.11 atmosphere 1005.0 10 < th dose independent rect. 7 3
102 377.57 precipitation 0.1 90 > th dose dependent rect. 13 2
108 377.78 precipitation 0.1 90 > th dose independent rect. 13 1
117 377.82 atmosphere 1005.0 10 < th dose independent rect. 7 15
119 377.90 humidity 80.0 10 > th dose dependent rect. 10 5
141 378.86 temperature 20.0 270 < th dose independent rect. 5 3
159 379.21 atmosphere 1005.0 10 < th dose independent rect. 7 13
168 379.64 atmosphere 1005.0 90 < th dose independent rect. 6 13
170 379.70 temperature 20.0 90 < th dose dependent rect. 6 1
184 380.08 precipitation 0.1 90 > th dose dependent rect. 7 8
203 380.40 radiation 40.0 90 < th dose dependent rect. 12 16
292 382.05 humidity 90.0 270 > th dose dependent rect. 6 2
359 383.35 atmosphere 1005.0 30 > th dose independent rect. 3 15
380 383.98 radiation 1.0 270 < th dose independent rect. 6 1
389 384.21 radiation 1.0 30 < th dose dependent rect. 7 1
417 384.60 radiation 10.0 90 < th dose dependent rect. 8 6
430 384.85 radiation 1.0 10 > th dose independent rect. 15 21
437 384.98 humidity 80.0 10 > th dose independent rect. 10 5
477 385.41 atmosphere 1005.0 30 > th dose independent rect. 1 17
490 385.57 atmosphere 1010.0 90 < th dose dependent rect. 7 2
502 385.69 atmosphere 1015.0 270 < th dose dependent rect. 5 3
508 385.73 atmosphere 1010.0 10 < th dose dependent rect. 7 3
522 385.94 humidity 50.0 30 > th dose independent rect. 13 15
535 386.12 radiation 20.0 90 < th dose independent rect. 12 5
539 386.15 atmosphere 1005.0 90 < th dose independent rect. 6 9
557 386.31 atmosphere 1005.0 30 < th dose independent rect. 7 7
561 386.36 atmosphere 1005.0 30 < th dose independent sin 0 NA
569 386.40 atmosphere 1005.0 30 > th dose independent rect. 3 13
581 386.50 radiation 1.0 10 > th dose independent rect. 17 19
599 386.69 atmosphere 1005.0 10 < th dose independent rect. 2 20
607 386.72 atmosphere 1015.0 270 < th dose dependent rect. 4 5
624 386.90 precipitation 0.1 90 > th dose dependent sin 1 NA
646 387.04 radiation 10.0 10 < th dose dependent rect. 3 12
651 387.06 humidity 90.0 720 > th dose independent rect. 6 2
672 387.20 radiation 10.0 10 < th dose dependent rect. 3 23
679 387.26 atmosphere 1005.0 90 > th dose independent sin 1 NA
733 387.53 radiation 30.0 90 < th dose dependent rect. 23 15
735 387.55 radiation 10.0 10 < th dose dependent sin 5 NA
745 387.62 temperature 30.0 30 < th dose dependent rect. 13 1
752 387.65 atmosphere 1005.0 90 > th dose independent rect. 1 14
758 387.68 atmosphere 1015.0 90 < th dose dependent rect. 6 17
767 387.74 atmosphere 1005.0 10 > th dose independent rect. 1 23
768 387.74 atmosphere 1005.0 10 > th dose independent rect. 3 23
776 387.77 wind 3.0 10 < th dose independent rect. 12 2
778 387.78 wind 5.0 30 < th dose independent rect. 13 15
780 387.79 atmosphere 1005.0 10 < th dose independent rect. 24 23
829 388.12 atmosphere 1005.0 720 > th dose independent rect. 3 1
839 388.16 atmosphere 995.0 30 > th dose independent rect. 13 15
842 388.17 atmosphere 1005.0 10 > th dose independent rect. 9 21
882 388.43 radiation 30.0 10 < th dose dependent rect. 24 15
885 388.44 radiation 40.0 90 < th dose dependent rect. 5 23
894 388.48 radiation 10.0 10 < th dose dependent rect. 21 23
907 388.57 atmosphere 1005.0 10 > th dose independent rect. 22 22
920 388.65 wind 9.0 30 < th dose dependent rect. 13 15
931 388.70 humidity 50.0 270 > th dose independent rect. 14 9
936 388.71 radiation 30.0 30 < th dose independent rect. 24 15
942 388.73 atmosphere 1005.0 10 < th dose independent rect. 13 23
947 388.75 radiation 30.0 90 < th dose dependent rect. 9 20
948 388.76 humidity 80.0 10 > th dose independent rect. 24 15
958 388.78 radiation 10.0 90 < th dose independent rect. 23 15
987 388.90 radiation 20.0 90 < th dose independent rect. 9 19
995 388.93 radiation 30.0 90 < th dose dependent rect. 11 7
1000 388.94 radiation 30.0 10 < th dose dependent rect. 3 12