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Os08g0522500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 19 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0271) R2 : 0.639
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.96 (0.0693) R2dC : 0.638 R2C : 0.634
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.132 (0.057) R2dN8 : 0.0055 R2N8 : 0.00153
σ : 0.511
deviance : 119.4
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_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.86 0.448 10.9 -0.376 1.47 -0.985 1.91 2.56 -0.232 21.3 6.08 660 -- --
94.94 0.454 10.9 -0.423 1.87 -1.13 1.55 -- -0.285 22.2 4.73 425 -- --
94.08 0.452 10.9 -0.418 1.66 -0.93 -- 2.13 -0.369 21.8 5.128 440 -- --
105.55 0.478 10.9 -0.423 1.9 -1.05 -- -- -0.237 22 6.16 419 -- --
149.45 0.569 10.9 -0.637 -- -2.46 -- 4.05 -0.384 -- 3.22 898 -- --
110.74 0.493 10.9 -0.422 1.95 -- 1.09 -- -0.185 20.1 -- -- -- --
114.05 0.5 10.9 -0.451 1.96 -- -- -- -0.183 20 -- -- -- --
118 0.506 10.9 -0.622 -- -2.79 -- -- -0.358 -- 1.41 990 -- --
110.01 0.489 10.9 -- 1.89 -1.06 -- -- -0.203 22 6.39 417 -- --
323.29 0.84 10.8 -0.47 -- -- -- -- -0.208 -- -- -- -- --
119.4 0.511 10.9 -- 1.96 -- -- -- -0.132 20 -- -- -- --
128.32 0.528 10.9 -- -- -2.85 -- -- -0.266 -- 1.55 967 -- --
329.12 0.847 10.8 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.48 humidity 90.0 10 < th dose independent rect. 11 9
2 89.05 humidity 90.0 270 < th dose independent rect. 8 10
3 89.17 radiation 40.0 1440 < th dose independent rect. 16 14
6 89.68 radiation 10.0 720 < th dose dependent rect. 5 21
7 89.79 temperature 15.0 270 > th dose independent rect. 9 9
9 89.91 radiation 10.0 720 < th dose dependent rect. 5 19
15 90.29 radiation 10.0 720 < th dose dependent rect. 3 23
18 90.62 humidity 50.0 270 > th dose dependent rect. 18 17
19 90.65 radiation 10.0 720 < th dose dependent rect. 5 23
21 90.67 radiation 10.0 720 < th dose dependent rect. 20 23
24 90.74 radiation 40.0 10 < th dose independent rect. 20 16
25 90.78 temperature 30.0 720 < th dose independent rect. 18 8
27 90.91 radiation 10.0 720 < th dose dependent rect. 20 21
29 90.93 radiation 20.0 270 < th dose independent rect. 18 16
35 91.07 temperature 15.0 1440 > th dose independent rect. 6 10
36 91.09 radiation 10.0 720 < th dose dependent rect. 18 23
39 91.19 humidity 90.0 270 < th dose dependent rect. 8 10
43 91.25 humidity 90.0 90 < th dose dependent rect. 11 9
45 91.26 radiation 10.0 720 < th dose dependent rect. 1 23
46 91.27 humidity 70.0 720 > th dose independent rect. 18 8
47 91.27 temperature 15.0 90 > th dose independent rect. 11 9
56 91.36 radiation 10.0 720 < th dose dependent rect. 11 23
57 91.37 radiation 10.0 720 < th dose dependent rect. 9 23
59 91.39 radiation 40.0 270 < th dose dependent rect. 18 16
61 91.43 radiation 10.0 720 < th dose dependent no NA NA
65 91.44 humidity 90.0 270 < th dose independent sin 23 NA
67 91.48 atmosphere 1015.0 720 < th dose independent rect. 24 9
68 91.49 radiation 10.0 720 < th dose dependent rect. 22 23
72 91.52 radiation 10.0 720 < th dose dependent rect. 13 23
88 91.65 humidity 90.0 270 < th dose dependent sin 23 NA
99 91.72 humidity 70.0 720 > th dose independent rect. 18 14
106 91.77 humidity 70.0 30 > th dose independent rect. 20 17
124 91.88 atmosphere 1015.0 720 < th dose independent rect. 24 14
143 91.98 humidity 70.0 720 > th dose independent sin 11 NA
162 92.08 temperature 25.0 720 < th dose independent rect. 21 4
184 92.21 temperature 25.0 720 < th dose independent rect. 21 2
201 92.29 humidity 90.0 10 < th dose independent rect. 11 7
208 92.31 radiation 40.0 90 < th dose dependent rect. 12 17
210 92.34 humidity 90.0 270 < th dose independent rect. 4 14
215 92.36 humidity 60.0 720 > th dose independent rect. 16 16
218 92.37 humidity 70.0 720 > th dose independent rect. 16 8
222 92.39 humidity 90.0 10 < th dose independent rect. 6 12
223 92.39 atmosphere 1015.0 10 < th dose dependent rect. 11 9
231 92.41 atmosphere 1015.0 10 < th dose dependent rect. 20 15
260 92.53 temperature 30.0 720 < th dose independent rect. 18 15
261 92.53 radiation 20.0 720 < th dose independent rect. 15 17
262 92.53 humidity 70.0 270 > th dose independent rect. 16 18
270 92.56 humidity 90.0 10 < th dose independent rect. 6 14
271 92.57 atmosphere 1015.0 720 < th dose independent rect. 24 18
287 92.62 temperature 15.0 90 > th dose independent rect. 5 8
290 92.64 humidity 90.0 10 < th dose independent sin 22 NA
298 92.66 atmosphere 1015.0 720 < th dose independent rect. 24 20
333 92.78 radiation 40.0 30 < th dose dependent rect. 20 17
335 92.79 radiation 20.0 720 < th dose independent rect. 23 9
340 92.80 temperature 15.0 90 > th dose independent sin 1 NA
341 92.80 humidity 90.0 720 < th dose independent rect. 8 6
342 92.80 atmosphere 1015.0 720 < th dose independent rect. 2 9
349 92.81 atmosphere 1010.0 10 < th dose independent rect. 11 9
353 92.82 atmosphere 1015.0 720 < th dose independent sin 2 NA
356 92.83 humidity 70.0 30 > th dose independent rect. 18 19
367 92.86 temperature 15.0 720 > th dose independent rect. 5 2
373 92.87 temperature 15.0 1440 > th dose independent rect. 6 8
380 92.88 radiation 40.0 720 < th dose dependent rect. 15 17
439 93.04 humidity 90.0 10 < th dose independent rect. 6 10
442 93.05 temperature 10.0 720 > th dose dependent rect. 17 3
461 93.09 radiation 1.0 720 > th dose independent rect. 17 21
469 93.11 temperature 15.0 90 > th dose independent rect. 5 10
475 93.13 temperature 15.0 720 > th dose independent rect. 4 8
486 93.17 wind 5.0 90 < th dose independent rect. 13 16
492 93.18 radiation 10.0 720 < th dose dependent sin 21 NA
499 93.19 humidity 90.0 720 < th dose independent rect. 8 4
501 93.19 radiation 10.0 720 < th dose independent rect. 11 21
539 93.28 radiation 20.0 90 < th dose independent rect. 12 17
562 93.34 humidity 90.0 10 < th dose independent rect. 8 12
564 93.34 atmosphere 1015.0 720 < th dose independent rect. 2 17
587 93.40 radiation 10.0 1440 < th dose independent rect. 15 2
597 93.42 radiation 1.0 270 > th dose independent sin 22 NA
598 93.42 temperature 15.0 720 > th dose independent rect. 6 6
604 93.43 radiation 20.0 720 < th dose independent sin 10 NA
624 93.47 radiation 1.0 270 > th dose independent rect. 9 10
660 93.51 radiation 10.0 720 < th dose independent rect. 5 21
664 93.52 temperature 25.0 720 < th dose independent rect. 6 5
667 93.52 temperature 15.0 720 > th dose independent rect. 5 12
668 93.52 temperature 15.0 90 > th dose independent rect. 6 17
671 93.53 radiation 20.0 720 < th dose independent rect. 5 3
672 93.53 temperature 15.0 1440 > th dose independent rect. 6 18
680 93.54 humidity 90.0 720 < th dose independent rect. 5 7
702 93.56 temperature 10.0 720 > th dose dependent rect. 17 6
716 93.58 radiation 1.0 1440 > th dose dependent rect. 16 1
748 93.63 radiation 1.0 720 > th dose independent rect. 8 6
755 93.64 temperature 30.0 90 < th dose independent rect. 20 15
796 93.72 radiation 10.0 720 < th dose independent rect. 9 22
835 93.78 radiation 10.0 720 < th dose independent rect. 5 19
840 93.80 temperature 30.0 720 < th dose independent sin 11 NA
844 93.80 wind 5.0 90 < th dose independent rect. 15 14
846 93.80 wind 9.0 90 < th dose dependent rect. 13 16
851 93.81 precipitation 0.1 270 < th dose independent rect. 9 9
854 93.81 precipitation 0.1 270 < th dose dependent rect. 9 9
885 93.86 wind 1.0 270 > th dose independent rect. 9 9
901 93.89 wind 9.0 90 < th dose independent rect. 11 9
906 93.89 radiation 20.0 1440 < th dose dependent rect. 16 1
907 93.89 temperature 10.0 270 > th dose dependent rect. 21 8
920 93.91 temperature 25.0 720 < th dose independent rect. 9 2
921 93.91 radiation 10.0 1440 < th dose independent rect. 15 12
923 93.91 wind 9.0 270 < th dose independent rect. 18 15
935 93.93 atmosphere 1015.0 270 < th dose independent rect. 9 9
936 93.93 radiation 10.0 1440 < th dose independent rect. 15 10
938 93.93 temperature 10.0 270 > th dose independent rect. 18 15
940 93.93 atmosphere 995.0 270 > th dose independent rect. 18 15
965 93.96 atmosphere 1015.0 90 < th dose independent rect. 11 9
966 93.96 temperature 10.0 90 > th dose independent rect. 20 15
967 93.96 atmosphere 995.0 90 > th dose independent rect. 20 15
970 93.96 temperature 10.0 90 > th dose dependent rect. 23 7
996 93.99 radiation 40.0 1440 < th dose dependent rect. 16 1