Os08g0521300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0521300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.54 | 0.35 | 11 | 0.553 | 1.64 | 1.23 | -0.522 | -1.85 | -0.0547 | 9 | 20.73 | 38 | -- | -- |
| 58.42 | 0.356 | 11 | 0.862 | 1.69 | 1.11 | -0.706 | -- | 0.0406 | 9.06 | 19.67 | 76 | -- | -- |
| 56.4 | 0.35 | 11 | 0.487 | 1.65 | 1.23 | -- | -2.14 | -0.0676 | 9.02 | 20.93 | 43 | -- | -- |
| 60.35 | 0.362 | 11 | 0.847 | 1.68 | 1.08 | -- | -- | 0.0413 | 9.09 | 19.83 | 76 | -- | -- |
| 200.83 | 0.66 | 11.1 | 0.357 | -- | 1.63 | -- | -2.44 | -0.128 | -- | 19.64 | 3 | -- | -- |
| 76.75 | 0.411 | 10.9 | 1.11 | 1.73 | -- | -0.663 | -- | 0.228 | 9.97 | -- | -- | -- | -- |
| 78.47 | 0.415 | 10.9 | 1.09 | 1.73 | -- | -- | -- | 0.227 | 9.99 | -- | -- | -- | -- |
| 205.58 | 0.668 | 11 | 0.734 | -- | 1.65 | -- | -- | -0.0301 | -- | 17.6 | 3 | -- | -- |
| 75.47 | 0.405 | 11 | -- | 1.75 | 1.76 | -- | -- | -0.097 | 8.83 | 14.7 | 137 | -- | -- |
| 259.07 | 0.752 | 11 | 1.07 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 109.58 | 0.49 | 11 | -- | 1.73 | -- | -- | -- | 0.106 | 9.94 | -- | -- | -- | -- |
| 218.52 | 0.688 | 11.1 | -- | -- | 2.15 | -- | -- | -0.137 | -- | 14.25 | 2 | -- | -- |
| 289.02 | 0.794 | 11 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 16 |
| 4 | 45.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 276 | 53.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 286 | 54.05 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 304 | 54.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 324 | 54.88 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 18 |
| 350 | 55.20 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 373 | 55.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 427 | 55.94 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 431 | 55.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 460 | 56.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 506 | 56.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 555 | 56.84 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 15 |
| 570 | 56.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 659 | 57.32 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 674 | 57.36 | humidity | 90 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 706 | 57.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 737 | 57.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 757 | 57.63 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 802 | 57.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 812 | 57.84 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 839 | 57.97 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 857 | 58.05 | humidity | 50 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 868 | 58.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 899 | 58.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 917 | 58.31 | humidity | 70 | 90 | > th | dose independent | rect. | 8 | 17 |