BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0521300 Os08g0521300|Os08g0521300
(473 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21080.1 | chr2:9043707-9045113 FORWARD LENGTH=415 128 6e-30
AT1G50630.1 | chr1:18751654-18753569 REVERSE LENGTH=454 70 3e-12
AT3G20300.1 | chr3:7079832-7081809 REVERSE LENGTH=453 67 3e-11
AT4G22270.1 | chr4:11773396-11775782 FORWARD LENGTH=438 55 6e-08
AT4G03820.2 | chr4:1772163-1774380 REVERSE LENGTH=454 51 1e-06
AT1G67570.1 | chr1:25325318-25326938 FORWARD LENGTH=457 49 4e-06
>AT2G21080.1 | chr2:9043707-9045113 FORWARD LENGTH=415
Length = 414
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 115/279 (41%), Gaps = 10/279 (3%)
Query: 39 SKSVIHDELRSFRVFLQWCALDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGASPV 98
SKS+ D+LR+FR+ L+WCALDH
Sbjct: 24 SKSLPSDDLRNFRLLLKWCALDHSSSCGKAVSYMMFVVFTLLVPLISCLFIKTPRNRPSA 83
Query: 99 SASAITFNRVAQAPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAFVRRGYXXX 158
A +FN + Q P + + VR GY
Sbjct: 84 VMDANSFNVLVQFPESGLAVIGFLTLICFFRIYSLTKLLFLDD------STLVRLGYSRE 137
Query: 159 XXXXXXXXXXXXXXXXCVEAAHKAVFFF-ATVRVEXXXXXXXXXXXWRAVALVATVASWV 217
VE HK++FF+ A V V + SWV
Sbjct: 138 LDKALRYLAYILVPSFLVELVHKSIFFYSAEVSFPFIKSSCAAL---NFVMFFLVLFSWV 194
Query: 218 YRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXXXXXXXTQLLATSHRY 277
YRTGVFLLVC+LFRLTCELQILRF G++ +FD QL ATSHRY
Sbjct: 195 YRTGVFLLVCILFRLTCELQILRFRGLHKLFDRCGSDTIEDVCKEHVRIKKQLSATSHRY 254
Query: 278 RAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDLLV 316
R FI++ V I+ SQ AL++ L+SK KSF +SGDL+V
Sbjct: 255 RFFIITAFVVISTSQFVALLLVLASKSEKSFLSSGDLVV 293
>AT1G50630.1 | chr1:18751654-18753569 REVERSE LENGTH=454
Length = 453
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 206 AVALVATVASWVYRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXXXXX 265
VA + + SW+YRT V LVCVLFRL C LQILR + +F +
Sbjct: 188 TVACIMELCSWLYRTTVIFLVCVLFRLICHLQILRLQDFAKLFQIDSDVGSILSEHLRIR 247
Query: 266 XXTQLLATSHRYRAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDLLVTPHSHSAAA 325
+++ SHRYR+FIL L+ +T SQ +L++ + + +G+L A
Sbjct: 248 RHLRII--SHRYRSFILCLLILVTGSQFSSLLITTKAYTEVNIYRAGEL---------AL 296
Query: 326 AGVAITTRCLYPRRLAGRLVGAAQ 349
+ + T L R A ++ AQ
Sbjct: 297 CSMTLVTALLILLRSASKITHKAQ 320
>AT3G20300.1 | chr3:7079832-7081809 REVERSE LENGTH=453
Length = 452
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 206 AVALVATVASWVYRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXXXXX 265
VA + + SW+YRT V LVCVLFRL C LQILR + +F +
Sbjct: 194 TVACLMELCSWLYRTTVIFLVCVLFRLICHLQILRLQDFAQVFQMDSDVGSILSEHLRIR 253
Query: 266 XXTQLLATSHRYRAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDLLVTPHSHSAAA 325
+++ SHRYR FIL L+ +T SQ +L++ + + +G+L A
Sbjct: 254 RHLRII--SHRYRTFILLSLILVTGSQFYSLLITTKAYAELNIYRAGEL---------AL 302
Query: 326 AGVAITTRCLYPRRLAGRLVGAAQ 349
+ + T L R A ++ AQ
Sbjct: 303 CSMTLVTALLILLRSASKITHKAQ 326
>AT4G22270.1 | chr4:11773396-11775782 FORWARD LENGTH=438
Length = 437
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 206 AVALVATVASWVYRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXXXXX 265
VA ++SW+YR +F++VC+L+++TC LQ LR + F
Sbjct: 181 VVACTLQLSSWLYRNSLFIIVCILYKITCHLQTLRLDDFARCF-ASEITDVRSALGEHQK 239
Query: 266 XXTQLLATSHRYRAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDL 314
L SHR+R FIL L+ +T +Q AL+ + + G+L
Sbjct: 240 IRRNLRIVSHRFRRFILLSLILVTATQFMALLTTTRASVAVNIYEVGEL 288
>AT4G03820.2 | chr4:1772163-1774380 REVERSE LENGTH=454
Length = 453
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 206 AVALVATVASWVYRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXXXXX 265
+A ++SW+YRT +F++ C+L++ C LQ+LR + F
Sbjct: 178 VLACTLQLSSWLYRTSLFIIACILYQNICHLQVLRLDEFARCF-ASEIKDFSSILAEHLK 236
Query: 266 XXTQLLATSHRYRAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDL 314
+L SHR+R FIL L +T +Q AL+ + + + G+L
Sbjct: 237 IRRELKIVSHRFRRFILLSLFFVTATQFMALLTTIRASVPFNIYEVGEL 285
>AT1G67570.1 | chr1:25325318-25326938 FORWARD LENGTH=457
Length = 456
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 204 WRAVA-LVATVASWVYRTGVFLLVCVLFRLTCELQILRFEGIYHMFDVXXXXXXXXXXXX 262
W +VA L++ + SW Y + +FL +F L C LQ++ FE + +
Sbjct: 193 WLSVAILLSMILSWTYLSTIFLAASAMFHLVCNLQVIHFEDYAKLLE--GESEISLFIYE 250
Query: 263 XXXXXTQLLATSHRYRAFILSCLVTITVSQLGALVVALSSKDGKSFANSGDLLVT 317
L SHR+R F+L + +T SQ L + ++ N GD V+
Sbjct: 251 HMRLRHYLSKISHRFRIFLLLQFLVVTASQFTTLFQTTAYSGRITYINGGDFAVS 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,016,732
Number of extensions: 184718
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)