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Os08g0520100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pseudouridine synthase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.28 (0.0187) R2 : 0.0117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0912 (0.0393) R2dN8 : 0.0151 R2N8 : 0.0117
σ : 0.351
deviance : 56.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.12 0.312 7.26 0.062 0.385 0.548 -0.512 -0.811 -0.0503 10.6 0.1675 103 -- --
44.88 0.312 7.27 0.0297 0.4 0.564 0.396 -- -0.0509 10.8 0.1678 105 -- --
44.28 0.31 7.27 0.0214 0.4 0.569 -- -0.43 -0.0531 10.8 0.1507 107 -- --
45.09 0.313 7.26 0.0212 0.387 0.578 -- -- -0.0444 11.3 0.1698 121 -- --
49.4 0.327 7.31 -0.000976 -- 0.377 -- -0.773 -0.0823 -- 0.01995 393 -- --
49.04 0.328 7.29 -0.0357 0.345 -- -0.466 -- -0.104 2.64 -- -- -- --
49.8 0.33 7.29 -0.024 0.344 -- -- -- -0.101 2.7 -- -- -- --
49.27 0.327 7.28 0.0231 -- 0.333 -- -- -0.0869 -- 0.12 430 -- --
45.1 0.313 7.27 -- 0.375 0.563 -- -- -0.055 11.2 0.17 121 -- --
56.7 0.352 7.28 -0.00935 -- -- -- -- -0.0923 -- -- -- -- --
49.82 0.33 7.29 -- 0.344 -- -- -- -0.0983 2.7 -- -- -- --
48.59 0.325 7.3 -- -- 0.329 -- -- -0.146 -- 0.05 243 -- --
56.7 0.351 7.28 -- -- -- -- -- -0.0912 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.02 temperature 20.0 90 > th dose independent rect. 9 20
2 38.04 temperature 20.0 90 > th dose independent rect. 21 8
6 38.39 temperature 15.0 90 > th dose dependent rect. 21 8
15 38.88 temperature 20.0 10 > th dose independent rect. 22 7
21 39.05 temperature 15.0 10 > th dose dependent rect. 22 7
34 39.22 temperature 10.0 90 > th dose dependent rect. 9 20
36 39.34 temperature 15.0 10 > th dose dependent rect. 20 9
49 39.66 atmosphere 1015.0 90 < th dose independent rect. 9 20
51 39.67 radiation 1.0 90 < th dose dependent sin 9 NA
69 39.92 radiation 1.0 90 < th dose independent sin 9 NA
80 40.01 radiation 1.0 90 > th dose independent sin 9 NA
96 40.19 atmosphere 1015.0 10 < th dose independent rect. 9 21
102 40.23 radiation 1.0 90 > th dose independent rect. 18 15
133 40.51 radiation 30.0 90 < th dose independent rect. 5 4
134 40.51 radiation 1.0 90 > th dose independent rect. 4 5
144 40.52 atmosphere 1015.0 270 < th dose independent rect. 7 21
147 40.57 temperature 15.0 270 > th dose dependent rect. 5 2
148 40.58 humidity 70.0 90 > th dose independent rect. 5 4
151 40.59 temperature 10.0 90 > th dose dependent rect. 5 4
155 40.63 radiation 10.0 270 < th dose independent rect. 5 2
157 40.65 atmosphere 995.0 90 > th dose dependent rect. 5 4
167 40.72 wind 9.0 90 < th dose independent rect. 9 20
185 40.92 atmosphere 995.0 90 > th dose independent rect. 9 20
188 40.94 precipitation 0.1 90 < th dose independent rect. 5 4
189 40.94 precipitation 0.1 90 < th dose dependent rect. 5 4
190 40.95 temperature 30.0 90 < th dose independent rect. 5 4
194 40.96 wind 9.0 90 < th dose independent rect. 5 4
195 40.96 temperature 10.0 90 > th dose independent rect. 5 4
198 40.96 atmosphere 995.0 90 > th dose independent rect. 5 4
199 40.96 atmosphere 1015.0 90 < th dose independent rect. 5 4
211 41.01 radiation 30.0 90 < th dose independent rect. 5 6
232 41.13 radiation 30.0 10 < th dose independent rect. 6 3
245 41.19 precipitation 0.1 90 < th dose independent rect. 9 20
249 41.19 precipitation 0.1 90 < th dose dependent rect. 9 20
251 41.20 wind 9.0 90 < th dose dependent rect. 9 20
253 41.22 wind 1.0 90 > th dose independent rect. 5 4
262 41.24 atmosphere 995.0 10 > th dose dependent rect. 6 3
269 41.25 humidity 50.0 90 > th dose dependent rect. 5 4
270 41.26 humidity 70.0 10 > th dose independent rect. 6 3
272 41.26 humidity 50.0 90 > th dose dependent rect. 5 6
284 41.33 radiation 40.0 90 < th dose dependent rect. 5 4
294 41.36 radiation 40.0 10 < th dose dependent rect. 6 3
302 41.39 wind 9.0 10 < th dose independent rect. 9 21
325 41.48 atmosphere 995.0 10 > th dose independent rect. 9 21
341 41.51 precipitation 0.1 10 < th dose independent rect. 6 3
344 41.51 precipitation 0.1 10 < th dose dependent rect. 6 3
345 41.52 wind 7.0 10 < th dose independent rect. 6 3
347 41.52 temperature 10.0 10 > th dose independent rect. 6 3
349 41.52 temperature 30.0 10 < th dose independent rect. 6 3
350 41.52 humidity 50.0 10 > th dose independent rect. 6 3
352 41.52 atmosphere 995.0 10 > th dose independent rect. 6 3
353 41.52 atmosphere 1015.0 10 < th dose independent rect. 6 3
357 41.52 wind 9.0 270 < th dose independent rect. 7 22
358 41.52 atmosphere 995.0 270 > th dose dependent rect. 5 2
359 41.52 radiation 20.0 270 < th dose dependent rect. 5 2
371 41.56 humidity 70.0 270 > th dose independent rect. 5 2
372 41.56 atmosphere 1015.0 90 < th dose independent rect. 21 8
379 41.58 wind 9.0 90 < th dose dependent rect. 5 4
382 41.59 wind 1.0 10 > th dose independent rect. 6 3
401 41.61 wind 9.0 10 < th dose dependent rect. 6 3
426 41.63 radiation 40.0 90 < th dose dependent rect. 5 6
432 41.65 temperature 10.0 1440 > th dose independent rect. 7 3
435 41.65 atmosphere 995.0 1440 > th dose independent rect. 7 3
436 41.65 atmosphere 1015.0 1440 < th dose independent rect. 7 3
438 41.65 temperature 10.0 1440 > th dose independent rect. 10 21
443 41.66 radiation 30.0 270 < th dose independent rect. 3 6
445 41.67 atmosphere 1000.0 270 > th dose independent rect. 5 2
466 41.77 wind 1.0 270 > th dose independent rect. 5 2
467 41.77 temperature 20.0 270 > th dose independent rect. 5 2
469 41.77 temperature 20.0 90 > th dose independent rect. 13 16
477 41.79 humidity 50.0 270 > th dose dependent rect. 5 2
485 41.81 wind 7.0 270 < th dose independent rect. 5 2
487 41.81 temperature 10.0 270 > th dose independent rect. 5 2
489 41.81 temperature 30.0 270 < th dose independent rect. 5 2
490 41.81 humidity 50.0 270 > th dose independent rect. 5 2
493 41.81 atmosphere 1015.0 270 < th dose independent rect. 5 2
495 41.81 precipitation 0.1 270 < th dose independent rect. 5 2
497 41.81 temperature 10.0 270 > th dose independent rect. 7 22
498 41.81 precipitation 0.1 270 < th dose dependent rect. 5 2
500 41.82 radiation 40.0 10 < th dose dependent rect. 6 5
524 41.86 humidity 50.0 90 > th dose independent rect. 5 14
571 41.95 atmosphere 995.0 270 > th dose independent rect. 7 21
573 41.96 humidity 90.0 10 < th dose independent rect. 6 3
577 41.97 atmosphere 1015.0 270 < th dose independent rect. 21 6
587 41.98 radiation 40.0 270 < th dose dependent rect. 3 6
613 42.05 wind 9.0 90 < th dose dependent rect. 19 10
614 42.06 atmosphere 1015.0 90 < th dose independent rect. 23 6
641 42.11 humidity 50.0 10 > th dose independent rect. 5 19
670 42.17 humidity 50.0 1440 > th dose independent rect. 7 3
702 42.20 humidity 70.0 270 > th dose independent rect. 3 6
706 42.21 precipitation 0.1 270 < th dose independent rect. 7 21
711 42.21 humidity 50.0 90 > th dose dependent rect. 5 8
713 42.21 precipitation 0.1 270 < th dose dependent rect. 7 21
722 42.23 wind 9.0 90 < th dose dependent rect. 11 18
752 42.30 humidity 80.0 10 > th dose independent rect. 24 5
756 42.30 radiation 1.0 10 < th dose dependent rect. 24 16
770 42.31 wind 9.0 270 < th dose dependent rect. 5 2
779 42.32 humidity 70.0 90 > th dose independent rect. 5 6
811 42.36 radiation 1.0 90 < th dose dependent rect. 19 22
823 42.38 radiation 10.0 10 < th dose dependent rect. 24 6
828 42.40 wind 9.0 270 < th dose independent rect. 9 18
836 42.41 radiation 1.0 10 < th dose dependent rect. 24 14
866 42.44 humidity 50.0 270 > th dose dependent rect. 3 6
869 42.44 radiation 40.0 10 < th dose dependent rect. 6 18
877 42.45 atmosphere 995.0 30 > th dose dependent rect. 24 5
880 42.46 radiation 1.0 30 < th dose independent rect. 24 6
890 42.48 precipitation 0.1 270 < th dose independent rect. 3 5
893 42.48 precipitation 0.1 270 < th dose dependent rect. 3 5
897 42.49 radiation 1.0 10 < th dose independent rect. 24 16
901 42.50 atmosphere 1015.0 10 < th dose independent rect. 22 8
903 42.50 wind 1.0 90 > th dose independent rect. 9 20
909 42.51 radiation 1.0 10 < th dose independent rect. 24 14
911 42.51 radiation 1.0 10 < th dose dependent rect. 24 12
946 42.55 atmosphere 1015.0 10 < th dose independent rect. 20 10
973 42.59 atmosphere 1010.0 10 < th dose independent rect. 24 5
989 42.61 radiation 1.0 90 < th dose independent rect. 20 10
990 42.61 radiation 1.0 10 < th dose independent rect. 24 12
998 42.61 radiation 1.0 90 < th dose dependent rect. 20 10