BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0520100 Os08g0520100|AK120052
(475 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78910.1 | chr1:29665269-29667557 FORWARD LENGTH=479 544 e-155
AT3G19440.1 | chr3:6740778-6743132 FORWARD LENGTH=478 272 3e-73
AT1G76050.2 | chr1:28540858-28542826 FORWARD LENGTH=431 64 1e-10
AT3G52260.3 | chr3:19383452-19386440 REVERSE LENGTH=417 54 2e-07
>AT1G78910.1 | chr1:29665269-29667557 FORWARD LENGTH=479
Length = 478
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/398 (65%), Positives = 319/398 (80%), Gaps = 1/398 (0%)
Query: 79 VTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEP 138
VTA+SWVK+Y ++ + +Q HF K LV E + + ++KIKHN+VM+
Sbjct: 81 VTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQI 140
Query: 139 GMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMK 198
G +I LPVS+AE I KRY+TIP+ TL+PN DEI YL+RLV KDSAI+VLNKPPK+P+K
Sbjct: 141 GDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVK 200
Query: 199 GNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNL 258
GN+P+HNSMD LAAAALS+GN+EGP+LVHRLDRE+SGLL+ GRTKES LH +F+
Sbjct: 201 GNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKG 260
Query: 259 AKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGID 318
++ + WN ACEA Q+YWALVIG+PKE+EG+ISAPLSKVLLDDGK +RV+LA SG +
Sbjct: 261 RNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFE 320
Query: 319 GAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRW 378
+Q+A+T Y+V+GP I+GCSW+ELRP+T RKHQLRVHCAEALGTPIVGDYKYGWFVH+RW
Sbjct: 321 ASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRW 380
Query: 379 KQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLS-SNGE 437
KQ PQ D EP TG+PYKLRRPEGL++QKGSVLSKVPLLHLHCREMV+PNIAKFL N +
Sbjct: 381 KQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQ 440
Query: 438 WHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 475
E +KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 441 ETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478
>AT3G19440.1 | chr3:6740778-6743132 FORWARD LENGTH=478
Length = 477
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 235/401 (58%), Gaps = 26/401 (6%)
Query: 78 RVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVME 137
+ TA+ W+ D+P+ +VQ F R V E S +SV+ + Q+ LK++ + +
Sbjct: 89 KTTALRWILRCRPDLPRTLVQKLFRLRQVRREMS---MSVDGDELQRSQLKRVAAKESLN 145
Query: 138 PGMRIHLPVSVAEGEIKKRYETIPTA--TLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 195
G RI+LP+SV +T P + + +E +++ LV++KD AI+VLNKP +
Sbjct: 146 VGDRIYLPLSVDNDT----PQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGL 201
Query: 196 PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 255
++G + S+D LAA+ L + E P+LVHRLDR+ SGLL+ RT+ + T LH +F
Sbjct: 202 AVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFRE 261
Query: 256 VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 315
+ V ++ ++Y ALVIG P + G ISAPL KV++DDGK+ER+ +
Sbjct: 262 KTTGASAYGV-KKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNG 320
Query: 316 GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 375
+ Q A+T YRV+ + HG +W+ELRPLTGRKHQLRVHCAE LGTPIVGDYKYGW H
Sbjct: 321 ELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 380
Query: 376 QRWKQNPQPDFEPFTGE---PYKL-RRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKF 431
+ EPF P K P GL++ G V SK P LHLH +++ +PNI++
Sbjct: 381 KAR--------EPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQL 432
Query: 432 LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 472
L E + + + L+F AP+P+HM++S+N++ S
Sbjct: 433 L----EKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>AT1G76050.2 | chr1:28540858-28542826 FORWARD LENGTH=431
Length = 430
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 56/243 (23%)
Query: 165 LHPNKDEIEYLRRLVIHKDSAILVLNKPPKV---PMKGN--------------LP----- 202
L P K E E + ++++D +LV+NKP + P GN LP
Sbjct: 136 LQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYS 195
Query: 203 -----------VHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHW 251
+ + + + SY P +VHRLD+ ++GLL+ + + S L
Sbjct: 196 NSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAE 255
Query: 252 LFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVIL 311
F + + Y +L G P +G I P+ + D +
Sbjct: 256 QFKLHTIERV---------------YVSLTTGVPSPPQGRIEIPIGR----DSSNRIRMA 296
Query: 312 AHPSGIDG--AQEAVTAYRVMGPTIHGCS-WIELRPLTGRKHQLRVHCAEALGTPIVGDY 368
A P G+ G A+ A + Y+V+ G S +E R TGR HQ+R H A+ +G P++GD
Sbjct: 297 AIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDE 355
Query: 369 KYG 371
YG
Sbjct: 356 VYG 358
>AT3G52260.3 | chr3:19383452-19386440 REVERSE LENGTH=417
Length = 416
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 179 VIHKDSAILVLNKPPKVP-MKGNLPVHNSMDVLAAAALSYGNEEG---------PKLVHR 228
V+++D ++ LNKP + + G L VL +G + P VHR
Sbjct: 129 VLYEDDDLIALNKPSGLQVLPGGL--FQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHR 186
Query: 229 LDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAACEA---YMQRYWALVIGTP 285
L R +SG+LL +TK + T+L F + S + C + Y AL G
Sbjct: 187 LGRGTSGILLCAKTKLAKTKLAAYFAE-GTSLVGSGNLDQECGTGRKLSKIYRALADGIV 245
Query: 286 KEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPL 345
+E E +I P+ V+ G A+ + +A P G + R CS +++
Sbjct: 246 EEDEVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLER---DREKNCSLVKVEIQ 301
Query: 346 TGRKHQLRVHCAEALGTPIV 365
+GR HQ+R+H A +G P+V
Sbjct: 302 SGRPHQIRIHLA-YMGHPLV 320
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,005,765
Number of extensions: 426730
Number of successful extensions: 913
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 4
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)