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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0518900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chitinase (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0537) R2 : 0.483
β1 : 1.36 (0.193) R2dD : 0.101 R2D : -0.401
β2 : 0.65 (0.1) R2dC : 0.049 R2C : -0.161
β3 : 25.4 (1.65) R2dE : 7.48 R2E : -5.08
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 52.7 (3.97) R2dD*E : 5.16 R2D*E : -6.63
γ1 : -0.0999 (0.0889) R2dN8 : 0.001 R2N8 : -0.19
σ : 0.762
deviance : 267.49
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_____
C
peak time of C : 2.57
E
wheather : radiation
threshold : 2.545
memory length : 1266
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.98
open length of G : 4.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.77 0.793 3.86 1.06 0.666 25.5 -1.74 53.1 -0.175 3.82 1.076 1269 8.95 4.02
458.32 1 3.45 -0.771 0.73 0.977 -1.74 -- -0.38 3.15 2.043 1069 8.85 4.09
267.49 0.762 3.85 1.36 0.65 25.4 -- 52.7 -0.0999 2.57 2.545 1266 8.98 4.05
332.52 0.849 3.49 -0.569 0.758 3 -- -- -0.486 2.27 3.623 1095 11 1.2
291.47 0.795 3.87 1.58 -- 26.4 -- 54.2 -0.0437 -- 2.531 1272 8.93 4.02
459.26 1 3.45 -0.783 0.724 -- -1.72 -- -0.384 3.18 -- -- -- --
467.33 1.01 3.44 -0.748 0.72 -- -- -- -0.372 2.28 -- -- -- --
323.93 0.838 3.39 -0.0728 -- 4.38 -- -- -0.153 -- 2.606 1222 11 1.35
297.86 0.804 3.43 -- 0.692 4.38 -- -- -0.212 2.69 3.068 1213 10.9 1.35
498.1 1.04 3.44 -0.718 -- -- -- -- -0.355 -- -- -- -- --
482.07 1.03 3.43 -- 0.705 -- -- -- -0.289 2.26 -- -- -- --
324.01 0.838 3.39 -- -- 4.4 -- -- -0.146 -- 2.523 1224 10.9 1.33
511.68 1.06 3.42 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.83 radiation 1.0 1440 > th dose independent rect. 9 4
2 296.31 radiation 1.0 1440 < th dose independent rect. 9 4
3 296.31 radiation 1.0 1440 < th dose dependent rect. 9 4
4 296.83 radiation 1.0 1440 > th dose independent rect. 9 6
7 298.40 radiation 1.0 1440 < th dose independent rect. 9 6
8 298.40 radiation 1.0 1440 < th dose dependent rect. 9 6
9 298.50 radiation 1.0 1440 < th dose independent rect. 11 1
10 298.50 radiation 1.0 1440 < th dose dependent rect. 11 1
15 300.05 radiation 1.0 1440 < th dose independent rect. 11 4
16 300.05 radiation 1.0 1440 < th dose dependent rect. 11 4
37 301.51 radiation 1.0 1440 < th dose independent rect. 13 1
38 301.51 radiation 1.0 1440 < th dose dependent rect. 13 1
72 316.79 radiation 1.0 1440 > th dose independent rect. 9 1
94 337.61 humidity 60.0 14400 > th dose independent rect. 21 11
97 339.10 humidity 60.0 14400 < th dose independent rect. 6 1
99 339.10 humidity 60.0 14400 < th dose independent rect. 20 1
101 339.10 radiation 20.0 14400 > th dose independent rect. 17 1
152 339.10 humidity 60.0 14400 < th dose dependent rect. 6 1
154 339.10 humidity 60.0 14400 < th dose dependent rect. 20 1
156 339.10 radiation 20.0 14400 > th dose dependent rect. 17 1
207 339.15 humidity 60.0 14400 > th dose independent rect. 7 1
239 354.74 radiation 20.0 1440 < th dose dependent rect. 11 2
242 357.46 wind 7.0 4320 > th dose independent rect. 17 2
244 357.69 humidity 60.0 14400 > th dose independent rect. 3 5
274 361.23 wind 7.0 4320 < th dose independent rect. 17 2
282 363.14 precipitation 0.1 270 > th dose dependent rect. 2 2
289 363.51 precipitation 0.1 270 > th dose independent rect. 2 2
297 365.60 humidity 90.0 720 > th dose dependent rect. 20 1
298 365.64 radiation 1.0 1440 > th dose independent rect. 4 1
308 365.64 radiation 1.0 1440 > th dose dependent rect. 4 1
327 367.92 wind 7.0 4320 > th dose dependent rect. 18 1
339 368.68 radiation 10.0 1440 < th dose dependent rect. 10 18
418 372.27 humidity 80.0 1440 > th dose independent rect. 12 1
431 373.15 radiation 20.0 1440 < th dose independent rect. 11 2
440 374.00 atmosphere 1005.0 720 < th dose independent rect. 20 1
442 374.18 radiation 10.0 1440 < th dose dependent sin 19 NA
455 375.33 radiation 1.0 1440 < th dose independent rect. 11 11
476 375.43 humidity 80.0 1440 > th dose dependent rect. 12 1
477 375.45 radiation 1.0 1440 < th dose independent rect. 11 17
509 376.82 humidity 80.0 1440 < th dose independent rect. 12 1
516 377.46 atmosphere 1005.0 720 > th dose independent rect. 19 6
517 377.51 atmosphere 1005.0 720 < th dose independent rect. 19 6
609 379.52 atmosphere 1005.0 720 < th dose independent rect. 20 3
614 379.71 humidity 70.0 14400 > th dose independent rect. 21 1
622 380.04 humidity 70.0 14400 > th dose independent rect. 21 5
632 380.57 wind 5.0 720 > th dose independent rect. 21 1
638 380.63 humidity 90.0 720 > th dose dependent rect. 20 3
650 380.83 wind 1.0 270 < th dose dependent rect. 24 1
702 381.35 humidity 70.0 14400 > th dose independent rect. 21 7
710 381.45 wind 3.0 720 > th dose dependent rect. 21 1
726 382.11 precipitation 0.1 270 > th dose dependent rect. 24 4
788 383.82 atmosphere 1005.0 270 < th dose dependent rect. 1 1
927 386.09 radiation 10.0 1440 > th dose independent rect. 11 22
930 386.11 radiation 1.0 1440 > th dose independent sin 19 NA
956 386.16 radiation 1.0 1440 < th dose independent sin 19 NA
988 386.49 atmosphere 1005.0 10 < th dose dependent rect. 24 8