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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0518800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Class III chitinase homologue (OsChib3H-h) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.21 (0.073) R2 : 0.267
β1 : 2.12 (0.247) R2dD : 0.188 R2D : -0.176
β2 : 0.86 (0.134) R2dC : 0.0661 R2C : -0.0149
β3 : 20.2 (2.25) R2dE : 3.82 R2E : -2.99
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 42.3 (5.48) R2dD*E : 2.73 R2D*E : -3.28
γ1 : 0.117 (0.118) R2dN8 : 0.00216 R2N8 : -0.12
σ : 1.02
deviance : 476.68
__
_____
C
peak time of C : 21.2
E
wheather : radiation
threshold : 1.048
memory length : 1360
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.98
open length of G : 4.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
475.1 1.02 4.21 2.14 0.863 20.2 0.677 42.2 0.118 21.1 1.047 1361 8.97 4.08
546.32 1.09 3.92 1.48 1.01 2.93 1.2 -- 0.0144 22 0.2264 1148 6.78 10.2
476.68 1.02 4.21 2.12 0.86 20.2 -- 42.3 0.117 21.2 1.048 1360 8.98 4.08
522.81 1.06 3.83 1.22 0.823 2.83 -- -- 0.175 20.7 0.03934 1192 7.98 7.92
517.82 1.06 4.19 2.15 -- 20.5 -- 42.9 0.132 -- 1.046 1276 8.95 4.2
591.89 1.14 3.88 0.621 0.901 -- 0.379 -- -0.0556 21.2 -- -- -- --
592.39 1.14 3.88 0.607 0.898 -- -- -- -0.0564 21.3 -- -- -- --
561.54 1.1 3.81 1.31 -- 3.08 -- -- 0.154 -- 8.845e-07 1171 8.03 7.86
561.81 1.1 3.88 -- 0.814 2.71 -- -- -0.0435 21 0.83 1212 7.92 7.75
639.39 1.18 3.85 0.611 -- -- -- -- -0.0602 -- -- -- -- --
602.09 1.15 3.89 -- 0.898 -- -- -- -0.124 21.4 -- -- -- --
590.61 1.13 3.84 -- -- 2.26 -- -- -0.0144 -- 1.548 1190 9.2 6.7
649.24 1.19 3.87 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 477.29 radiation 1 1440 < th dose independent rect. 9 4
2 477.29 radiation 1 1440 < th dose dependent rect. 9 4
3 477.32 radiation 1 1440 > th dose independent rect. 9 4
4 477.58 radiation 1 1440 < th dose independent rect. 11 2
5 477.58 radiation 1 1440 < th dose dependent rect. 11 2
15 478.39 radiation 1 1440 < th dose independent rect. 13 1
16 478.39 radiation 1 1440 < th dose dependent rect. 13 1
58 491.72 wind 1 1440 < th dose independent rect. 6 1
66 494.97 wind 1 1440 > th dose independent rect. 6 1
73 500.98 wind 1 1440 < th dose dependent rect. 6 1
78 505.91 radiation 1 1440 > th dose independent rect. 9 1
89 515.87 temperature 30 4320 > th dose dependent rect. 8 1
104 517.37 humidity 70 14400 < th dose dependent rect. 21 1
117 518.57 wind 1 43200 > th dose independent rect. 6 3
118 519.12 wind 1 1440 > th dose independent rect. 23 1
133 519.55 humidity 60 14400 < th dose independent rect. 6 1
135 519.55 humidity 60 14400 < th dose independent rect. 20 1
137 519.55 radiation 20 14400 > th dose independent rect. 17 1
188 519.55 humidity 60 14400 < th dose dependent rect. 6 1
192 519.55 radiation 20 14400 > th dose dependent rect. 17 1
246 522.09 humidity 60 14400 > th dose independent rect. 7 1
247 522.19 wind 1 43200 > th dose independent rect. 6 1
250 523.16 atmosphere 995 43200 < th dose independent rect. 10 16
251 523.17 temperature 30 4320 > th dose independent rect. 8 1
265 523.35 atmosphere 995 43200 > th dose independent rect. 10 16
267 523.43 atmosphere 995 43200 > th dose independent rect. 24 22
268 523.47 atmosphere 995 43200 > th dose independent rect. 23 20
271 523.54 atmosphere 995 43200 < th dose independent rect. 9 18
273 523.56 atmosphere 995 43200 > th dose independent rect. 9 18
274 523.68 atmosphere 995 43200 < th dose independent rect. 11 14
275 523.88 atmosphere 995 43200 < th dose independent rect. 23 20
281 523.97 atmosphere 995 43200 > th dose independent rect. 11 14
289 524.19 atmosphere 995 43200 > th dose independent rect. 8 20
290 524.20 atmosphere 995 43200 < th dose independent sin 18 NA
291 524.21 atmosphere 995 43200 < th dose independent rect. 8 20
299 524.45 atmosphere 995 43200 < th dose dependent rect. 13 12
302 524.48 atmosphere 995 43200 > th dose independent rect. 5 22
312 524.64 atmosphere 995 43200 > th dose independent sin 18 NA
343 525.09 atmosphere 995 43200 < th dose dependent rect. 12 14
344 525.10 atmosphere 995 43200 < th dose dependent rect. 14 9
378 526.07 atmosphere 995 43200 < th dose dependent rect. 11 16
381 526.14 atmosphere 995 43200 < th dose dependent sin 17 NA
386 526.38 atmosphere 995 43200 < th dose independent no NA NA
395 526.76 humidity 80 1440 > th dose independent rect. 12 1
396 526.79 atmosphere 995 43200 > th dose independent rect. 12 12
421 527.26 atmosphere 995 43200 < th dose dependent rect. 10 20
436 527.58 atmosphere 995 43200 > th dose independent no NA NA
438 527.65 atmosphere 995 43200 > th dose independent sin 4 NA
440 527.68 wind 1 43200 > th dose independent rect. 5 6
447 527.73 wind 1 270 < th dose independent rect. 23 2
475 528.57 atmosphere 995 43200 < th dose independent sin 4 NA
500 529.11 humidity 60 14400 > th dose independent rect. 22 10
526 529.67 wind 1 43200 < th dose dependent rect. 6 4
554 530.38 wind 1 43200 > th dose independent rect. 4 8
556 530.44 humidity 80 1440 > th dose dependent rect. 12 1
566 530.79 temperature 30 4320 < th dose independent rect. 8 1
579 530.92 temperature 30 4320 < th dose independent rect. 2 7
597 531.08 temperature 30 4320 < th dose independent rect. 23 10
598 531.12 humidity 80 1440 < th dose independent rect. 12 1
600 531.14 temperature 30 4320 < th dose independent rect. 5 4
605 531.24 wind 1 43200 < th dose dependent rect. 7 2
619 531.50 temperature 30 4320 < th dose independent rect. 19 14
627 531.61 atmosphere 995 43200 < th dose dependent no NA NA
628 531.61 atmosphere 995 43200 < th dose dependent rect. 21 22
673 531.99 atmosphere 995 43200 < th dose dependent sin 8 NA
697 532.50 atmosphere 995 43200 > th dose independent rect. 3 8
733 532.68 atmosphere 995 43200 < th dose independent rect. 3 8
739 532.77 atmosphere 1000 43200 < th dose dependent rect. 4 11
747 532.88 wind 1 43200 < th dose independent rect. 5 7
772 533.15 atmosphere 995 43200 < th dose dependent rect. 21 14
793 533.37 temperature 20 1440 > th dose independent rect. 2 1
796 533.40 atmosphere 1000 43200 < th dose dependent sin 2 NA
834 533.84 wind 1 43200 < th dose dependent rect. 5 7
839 533.93 atmosphere 1000 43200 < th dose dependent rect. 5 6
848 533.98 atmosphere 995 43200 < th dose independent rect. 4 5
849 533.98 atmosphere 995 43200 < th dose dependent rect. 2 7
858 534.05 wind 1 43200 < th dose independent rect. 6 4
870 534.18 atmosphere 995 43200 < th dose independent rect. 5 3
879 534.32 atmosphere 995 43200 > th dose independent rect. 5 4
883 534.40 wind 1 43200 < th dose independent rect. 6 1
886 534.41 temperature 20 1440 < th dose independent rect. 2 1
902 534.61 wind 7 4320 > th dose independent rect. 17 2
939 535.23 atmosphere 1000 43200 < th dose dependent rect. 6 3
944 535.33 radiation 1 1440 > th dose independent rect. 4 1
954 535.33 radiation 1 1440 > th dose dependent rect. 4 1
970 535.40 atmosphere 1000 43200 < th dose dependent rect. 7 1
985 535.59 wind 1 43200 < th dose independent rect. 3 10