Os08g0517400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0517400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.94 | 0.412 | 7.97 | 1.04 | 0.459 | -3.03 | 0.501 | 0.657 | 0.0927 | 12.4 | 15.36 | 272 | -- | -- |
| 77.22 | 0.409 | 7.97 | 0.94 | 0.46 | -3.09 | 0.567 | -- | 0.076 | 12.4 | 14.81 | 271 | -- | -- |
| 77.93 | 0.411 | 7.96 | 1.11 | 0.456 | -2.99 | -- | 1.03 | 0.114 | 12.6 | 15.79 | 273 | -- | -- |
| 78.4 | 0.412 | 7.98 | 0.958 | 0.195 | -3.06 | -- | -- | 0.07 | 13.2 | 11.33 | 405 | -- | -- |
| 78.4 | 0.412 | 7.98 | 1.01 | -- | -3.02 | -- | 0.284 | 0.0813 | -- | 5.613 | 497 | -- | -- |
| 181.12 | 0.631 | 8.06 | 0.269 | 0.809 | -- | 0.752 | -- | -0.378 | 6.85 | -- | -- | -- | -- |
| 182.53 | 0.633 | 8.06 | 0.281 | 0.813 | -- | -- | -- | -0.38 | 6.74 | -- | -- | -- | -- |
| 78.46 | 0.413 | 7.98 | 0.967 | -- | -3.01 | -- | -- | 0.0686 | -- | 10.27 | 499 | -- | -- |
| 99.92 | 0.466 | 8.01 | -- | 0.254 | -2.49 | -- | -- | -0.076 | 12.4 | 16.84 | 357 | -- | -- |
| 217.07 | 0.688 | 8.08 | 0.3 | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
| 184.62 | 0.636 | 8.07 | -- | 0.816 | -- | -- | -- | -0.411 | 6.72 | -- | -- | -- | -- |
| 100.78 | 0.468 | 8.02 | -- | -- | -2.56 | -- | -- | -0.0715 | -- | 15.68 | 477 | -- | -- |
| 219.44 | 0.691 | 8.09 | -- | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 75.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 76.95 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 5 | 77.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 6 | 77.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 7 | 77.27 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 12 | 77.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 14 | 78.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 19 | 78.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 78.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 78.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 45 | 79.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 46 | 79.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 83 | 81.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 96 | 81.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 111 | 81.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 116 | 81.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 136 | 82.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 155 | 82.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 467 | 86.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 506 | 87.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 510 | 87.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 511 | 87.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 539 | 87.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 551 | 87.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 600 | 87.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 621 | 88.05 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 647 | 88.14 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 670 | 88.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 674 | 88.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 4 |