BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517400 Os08g0517400|Os08g0517400
(1314 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263 159 1e-38
ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241 113 7e-25
ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121 62 2e-09
AT3G20980.1 | chr3:7355963-7357966 FORWARD LENGTH=406 60 1e-08
>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
Length = 1262
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 167/345 (48%), Gaps = 36/345 (10%)
Query: 996 GMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVAAFKEEMKATFQMSDLGP 1055
G GF QS + + + L V VYVDD++I DA V K ++K+ F++ DLGP
Sbjct: 256 GFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGP 315
Query: 1056 LSFYLGIEVHQDNSGITLRQTAYAKRVVELAGLTDCNP------------AHSDGGETEA 1103
L ++LG+E+ + +GI + Q YA +++ GL C P AHS G +A
Sbjct: 316 LKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDA 375
Query: 1104 EPRQHDGGGGCYTR-------------------PTTEHQQAVKRIIRYVAGTLDHGLYYP 1144
+ + G Y + P HQQAV +I+ Y+ GT+ GL+Y
Sbjct: 376 KAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 435
Query: 1145 RCPGKAHFVGYSDSDHAGDIDTSKSTSGILFFLGECLVSWQSVKQQVVALSSCEAEYMAA 1204
+ +SD+ DT +ST+G FLG L+SW+S KQQVV+ SS EAEY A
Sbjct: 436 S-QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494
Query: 1205 SAASTQXXXXXXXXXXXXXXXTGAVELRVDSKSALALAKNPVFHERSKHIWVRYHFI-QS 1263
S A+ + + L D+ +A+ +A N VFHER+KHI H + +
Sbjct: 495 SFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
Query: 1264 YLEEGSIKASY--INTKDQLADLLTKPLGRIKFLELCSRIGMAQL 1306
+ + ++ S+ + +D + L+ P+ R + + S G+A L
Sbjct: 555 SVYQATLSYSFQAYDEQDGFTEYLS-PILRGTIMYIVSMFGLAGL 598
>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
Length = 240
Score = 113 bits (283), Expect = 7e-25, Method: Composition-based stats.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 31/219 (14%)
Query: 1022 VYVDDLVITGTKDAEVAAFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITLRQTAYAKR 1081
+YVDD+++TG+ + + ++ +TF M DLGP+ ++LGI++ SG+ L QT YA++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1082 VVELAGLTDCNPAHS-------DGGETEAEPRQHDG----GGGCY---TRPTTEHQ---- 1123
++ AG+ DC P + T P D G Y TRP +
Sbjct: 65 ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIV 124
Query: 1124 ------------QAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDTSKSTS 1171
+KR++RYV GT+ HGLY + K + + DSD AG T +ST+
Sbjct: 125 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK-NSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1172 GILFFLGECLVSWQSVKQQVVALSSCEAEYMAASAASTQ 1210
G FLG ++SW + +Q V+ SS E EY A + + +
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222
>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
Length = 120
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 697 NQTVVGMARALLKQRGMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGHKPAVSHL 756
N+T++ R++L + G+P F +A TAV+I+N+ P+ A++ P E W P S+L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 757 RVFGCLAFAKELGHIGKLDDRSTPG 781
R FGC+A+ GKL R+ G
Sbjct: 62 RRFGCVAYIH--CDEGKLKPRAKKG 84
>AT3G20980.1 | chr3:7355963-7357966 FORWARD LENGTH=406
Length = 405
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 404 VSLCNGSSNDKADGWYLDTGATHHMTGRREFFTEFDSSVRGSVKF--GDASGVE---IKG 458
V+ C + W + + ++HMT +FFT D S + VKF GD S ++G
Sbjct: 255 VAECFSKYTFHENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEG 314
Query: 459 VGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQLDENGSRVLVE--DGLMRIWDR 512
+G VTF G ++ + V Y+P + + +SV QL NG V +E G +WDR
Sbjct: 315 IGDVTFITNEG-NKTIKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCF-VWDR 368
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 24,923,998
Number of extensions: 1035863
Number of successful extensions: 2154
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 5
Length of query: 1314
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1204
Effective length of database: 8,090,809
Effective search space: 9741334036
Effective search space used: 9741334036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)