Os08g0513300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-hairpin-helix motif, class 2 domain containing protein.
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Os08g0513300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-hairpin-helix motif, class 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.18 | 0.275 | 11.3 | 0.24 | 0.956 | 0.538 | -0.0216 | 1.25 | -0.267 | 17.8 | 80 | 1554 | -- | -- |
| 35.33 | 0.277 | 11.3 | 0.189 | 0.915 | 0.652 | -0.0746 | -- | -0.264 | 17.8 | 79 | 1631 | -- | -- |
| 34.18 | 0.272 | 11.3 | 0.239 | 0.955 | 0.54 | -- | 1.25 | -0.267 | 17.8 | 79.96 | 1558 | -- | -- |
| 35.21 | 0.276 | 11.3 | 0.147 | 0.925 | 0.647 | -- | -- | -0.269 | 17.8 | 79 | 1586 | -- | -- |
| 56.08 | 0.349 | 11.3 | 0.488 | -- | 0.789 | -- | 1.5 | -0.117 | -- | 75.87 | 522 | -- | -- |
| 39.62 | 0.295 | 11.3 | 0.16 | 0.974 | -- | -0.0652 | -- | -0.255 | 17.7 | -- | -- | -- | -- |
| 39.63 | 0.295 | 11.3 | 0.161 | 0.974 | -- | -- | -- | -0.256 | 17.7 | -- | -- | -- | -- |
| 46.9 | 0.319 | 11.2 | 0.095 | -- | 0.849 | -- | -- | -0.29 | -- | 77.23 | 461 | -- | -- |
| 35.66 | 0.278 | 11.3 | -- | 0.93 | 0.654 | -- | -- | -0.298 | 17.9 | 78.96 | 1585 | -- | -- |
| 88.88 | 0.441 | 11.2 | 0.13 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 40.31 | 0.297 | 11.3 | -- | 0.972 | -- | -- | -- | -0.274 | 17.7 | -- | -- | -- | -- |
| 46.2 | 0.317 | 11.3 | -- | -- | 0.885 | -- | -- | -0.325 | -- | 75.75 | 475 | -- | -- |
| 89.32 | 0.441 | 11.3 | -- | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.06 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 2 | 33.06 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 3 | 33.57 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 6 | 33.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 17 | 33.79 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 21 | 33.83 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 33.87 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 41 | 33.87 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 49 | 33.90 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 76 | 33.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 87 | 33.95 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 92 | 33.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 102 | 33.97 | humidity | 80.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 120 | 33.99 | humidity | 80.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 125 | 33.99 | humidity | 80.0 | 720 | > th | dose independent | rect. | 4 | 18 |
| 129 | 33.99 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 143 | 34.01 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 14 | 6 |
| 163 | 34.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 178 | 34.04 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 179 | 34.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 196 | 34.05 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 200 | 34.05 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 208 | 34.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 210 | 34.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 241 | 34.07 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 264 | 34.08 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 279 | 34.09 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 369 | 34.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 458 | 34.17 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 473 | 34.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 509 | 34.19 | humidity | 90.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 617 | 34.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 13 |
| 649 | 34.25 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 672 | 34.25 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 677 | 34.25 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 678 | 34.26 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 755 | 34.28 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 819 | 34.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 880 | 34.33 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 901 | 34.34 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 987 | 34.36 | humidity | 80.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 989 | 34.36 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |