Os08g0510700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os08g0510700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.57 | 0.334 | 9.57 | 0.179 | 1.82 | 1.2 | -0.642 | 0.79 | 0.152 | 6.11 | 26.9 | 38 | -- | -- |
| 51.67 | 0.337 | 9.56 | 0.294 | 1.85 | 1.15 | -0.526 | -- | 0.176 | 6.13 | 26.9 | 38 | -- | -- |
| 51.53 | 0.334 | 9.57 | 0.2 | 1.81 | 1.2 | -- | 0.659 | 0.161 | 6.12 | 26.9 | 41 | -- | -- |
| 52.21 | 0.337 | 9.56 | 0.308 | 1.81 | 1.18 | -- | -- | 0.192 | 6.11 | 27 | 50 | -- | -- |
| 173.09 | 0.613 | 9.57 | 0.546 | -- | 2.68 | -- | 0.563 | 0.315 | -- | 39.09 | 274 | -- | -- |
| 71.1 | 0.395 | 9.62 | 0.0199 | 2.01 | -- | -0.454 | -- | -0.0758 | 5.58 | -- | -- | -- | -- |
| 71.61 | 0.396 | 9.61 | 0.0179 | 2.01 | -- | -- | -- | -0.0738 | 5.58 | -- | -- | -- | -- |
| 173.32 | 0.613 | 9.56 | 0.632 | -- | 2.69 | -- | -- | 0.338 | -- | 48.46 | 274 | -- | -- |
| 54.34 | 0.345 | 9.57 | -- | 1.86 | 1.03 | -- | -- | 0.124 | 6.07 | 26.9 | 49 | -- | -- |
| 281.64 | 0.784 | 9.64 | 0.0832 | -- | -- | -- | -- | -0.0253 | -- | -- | -- | -- | -- |
| 71.62 | 0.396 | 9.62 | -- | 2.01 | -- | -- | -- | -0.0758 | 5.58 | -- | -- | -- | -- |
| 183.14 | 0.63 | 9.58 | -- | -- | 2.48 | -- | -- | 0.244 | -- | 45.11 | 274 | -- | -- |
| 281.82 | 0.784 | 9.65 | -- | -- | -- | -- | -- | -0.0345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 2 | 44.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 64 | 48.38 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 19 |
| 87 | 49.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 168 | 51.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 172 | 51.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 175 | 51.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 188 | 51.35 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 223 | 51.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 293 | 52.23 | temperature | 20 | 90 | > th | dose dependent | sin | 12 | NA |
| 328 | 52.45 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 12 |
| 349 | 52.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 387 | 52.83 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 409 | 52.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 414 | 52.97 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 426 | 53.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 429 | 53.01 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 435 | 53.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 441 | 53.06 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 453 | 53.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 468 | 53.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 470 | 53.20 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 476 | 53.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 484 | 53.26 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 496 | 53.32 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 11 |
| 520 | 53.43 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 537 | 53.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 540 | 53.49 | temperature | 25 | 10 | < th | dose dependent | sin | 17 | NA |
| 551 | 53.52 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 575 | 53.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 580 | 53.70 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 635 | 53.90 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 705 | 54.13 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 718 | 54.21 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 22 |
| 720 | 54.22 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 8 |
| 723 | 54.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 743 | 54.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 778 | 54.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 796 | 54.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 810 | 54.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 820 | 54.55 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 933 | 54.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 939 | 54.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 956 | 54.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |