BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0510700 Os08g0510700|AK101254
(660 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44430.1 | chr2:18333603-18336165 FORWARD LENGTH=647 77 2e-14
AT3G60110.1 | chr3:22197993-22201159 FORWARD LENGTH=642 76 6e-14
AT2G42150.1 | chr2:17572463-17574564 FORWARD LENGTH=632 74 2e-13
AT3G57980.1 | chr3:21466919-21469148 REVERSE LENGTH=633 72 9e-13
AT1G61215.1 | chr1:22573173-22575374 FORWARD LENGTH=476 71 2e-12
>AT2G44430.1 | chr2:18333603-18336165 FORWARD LENGTH=647
Length = 646
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 309 VRTSKAGAVFERRLDSQDGERYSGTIRRHVDLETVRSRLVGXXXXXXXXXXXXXXSEFYR 368
+R+ G++FERRL SQ+ + Y +++H+D+ET++ +L FYR
Sbjct: 319 IRSHPRGSLFERRLRSQEAKDYKSMVKQHLDIETIQRKLKQGSYDSSSLI-------FYR 371
Query: 369 DMMLLCANALVFFPRGSPEHAAALQLRALVSKQVSKD 405
D+ LL NA+VFFP S E AA +LRA+VS+++ K+
Sbjct: 372 DLQLLFTNAIVFFPLSSSESMAAHELRAVVSQEMRKE 408
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 28 EIWGTSEDLLLACAVSRHGTASWDAVAKEMQSRCP-SAAVFTPTTCRLRFRVLHRRF 83
+ WGT E+LLLACAV RHG WD+VA E++SR S + + CR ++R L RRF
Sbjct: 48 QAWGTWEELLLACAVKRHGFGDWDSVATEVRSRSSLSHLLASANDCRHKYRDLKRRF 104
>AT3G60110.1 | chr3:22197993-22201159 FORWARD LENGTH=642
Length = 641
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 309 VRTSKAGAVFERRLDSQDGERYSGTIRRHVDLETVRSRLVGXXXXXXXXXXXXXXSEFYR 368
+R+ G+VFE RL SQD + Y IR+H+D++T+ ++ FYR
Sbjct: 310 IRSHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKKMEKGSYVSSSLS-------FYR 362
Query: 369 DMMLLCANALVFFPRGSPEHAAALQLRALVSKQVSK 404
D+ LL NA+VFFP S E AA +LR LVS ++ K
Sbjct: 363 DLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEMKK 398
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 28 EIWGTSEDLLLACAVSRHGTASWDAVAKEMQSRCPSAAVFTPTTCRLRFRVLHRRFSGGV 87
++WGT E+L+L CAV RH + WD+VAKE+Q+R S+ + + CRL+++ L RRF V
Sbjct: 50 QVWGTWEELVLTCAVKRHAFSDWDSVAKEVQARSRSSLIVSAVNCRLKYQDLKRRFQDSV 109
>AT2G42150.1 | chr2:17572463-17574564 FORWARD LENGTH=632
Length = 631
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 28 EIWGTSEDLLLACAVSRHGTASWDAVAKEMQSRCPSAAVFTPTTCRLRFRVLHRRFSGGV 87
+ W T E+LLLACAV RHGT SW++V+ E+Q P+ T + CR ++ L RF+ +
Sbjct: 14 QTWSTWEELLLACAVHRHGTESWNSVSAEIQKLSPNLCSLTASACRHKYFDLKSRFTQEL 73
Query: 88 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYDLSIGSLQSKVKRLKEE 147
+YDLSI +LQSKVK+L+EE
Sbjct: 74 P----------VPESVAEISTAPWLEELRKLRVDELRREVEQYDLSISTLQSKVKQLEEE 123
Query: 148 REKSI 152
RE S
Sbjct: 124 REMSF 128
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 315 GAVFERRLDSQDGERYSGTIRRHVDLETVRSRLVGXXXXXXXXXXXXXXSEFYRDMMLLC 374
G+ F RRL+ Q+ Y IR HVD E +R R+ G F+RD++LL
Sbjct: 289 GSHFSRRLERQETIEYGTIIREHVDFEIIRKRVEGGLYKSWRIN-------FFRDLLLLV 341
Query: 375 ANALVFFPRGSPEHAAALQLRALVSKQVSKDRQPHXXXXXXXXXXXXXXXXXXXXXXXXX 434
NA VF+ RGS E A QL LV KQ++ +
Sbjct: 342 NNARVFYHRGSSEFKFAEQLHQLVKKQMTTTLKGLSNRDEISISPPKEEVVAIPSSKPVS 401
Query: 435 XXPLLEKAPIIVCRKRS 451
P + I+ CRKRS
Sbjct: 402 SKPRMSVPNIVACRKRS 418
>AT3G57980.1 | chr3:21466919-21469148 REVERSE LENGTH=633
Length = 632
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 315 GAVFERRLDSQDGERYSGTIRRHVDLETVRSRLVGXXXXXXXXXXXXXXSEFYRDMMLLC 374
G+ F RRL++Q+ Y IR+H+D E +RSR+ ++F+RD++LL
Sbjct: 291 GSHFSRRLETQETSDYYRIIRQHIDFEMIRSRV-------EEGYYKTARTKFFRDLLLLI 343
Query: 375 ANALVFFPRGSPEHAAALQLRALVSKQVSKDRQPHXXXXXXXXXXXXXXXXXXXXXXXXX 434
N VF+ SPE AA QL L+ KQ+S
Sbjct: 344 NNVRVFYGEPSPEFNAAKQLYQLIKKQMSF----KIPKQTLPPPKEDALVTSKEEVKVSS 399
Query: 435 XXPLLEKAPIIVCRKRSSI 453
P L PII CRKRSS+
Sbjct: 400 LKPTL-SVPIIACRKRSSL 417
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 34 EDLLLACAVSRHGTASWDAVAKEMQSRCPSAAVFTPTTCRLRFRVLHRRFSGGVTXXXXX 93
E+LLLACAV RHGT SWD+VA E+ + + T CR ++ L RRFS +
Sbjct: 2 EELLLACAVHRHGTDSWDSVASEVHKQNSTFRTLTAIDCRHKYNDLKRRFSRNLV----S 57
Query: 94 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYDLSIGSLQSKVKRLKEEREKSIS 153
+YDLSI SLQ KVK L++EREKS+
Sbjct: 58 PGSADEETLAAEISSVPWLEELRKLRVDELRREVERYDLSISSLQLKVKTLEDEREKSLK 117
Query: 154 GET 156
E
Sbjct: 118 TEN 120
>AT1G61215.1 | chr1:22573173-22575374 FORWARD LENGTH=476
Length = 475
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 308 SVRTSKAGAVFERRLDSQDGERYSGTIRRHVDLETVRSRLVGXXXXXXXXXXXXXXSEFY 367
++ ++ VF RRLDSQ RY +RRH+DL+TV+SR+ G E +
Sbjct: 275 TIAQNECALVFRRRLDSQKRGRYKKLVRRHMDLDTVQSRINGCSISSAK--------ELF 326
Query: 368 RDMMLLCANALVFFPRGSPEHAAALQLRALVSK----QVSKDRQPH 409
RD +L+ NA +F+ + + E+ +A+ LR +V+K +++D PH
Sbjct: 327 RDFLLVANNAAIFYSKNTREYKSAVGLRDIVTKSLRHYLTEDHPPH 372
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 30 WGTSEDLLLACAVSRHGTASWDAVAKEMQSRCPSAAVFTPTTCRLRFRVLHRRFSG 85
WGT E+LLL AV RHGT W VA E++S +FTP C+ +++ L +R+ G
Sbjct: 14 WGTWEELLLGGAVLRHGTGDWTVVADELRSHSL-PEIFTPEICKAKYKDLRKRYVG 68
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,726,996
Number of extensions: 144719
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 10
Length of query: 660
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 555
Effective length of database: 8,227,889
Effective search space: 4566478395
Effective search space used: 4566478395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)