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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0508500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.66 (0.0554) R2 : 0.893
β1 : -0.819 (0.204) R2dD : 0.00406 R2D : 0.00472
β2 : 10.4 (0.203) R2dC : 1.27 R2C : 0.76
β3 : -2.3 (0.165) R2dE : 0.0939 R2E : -0.41
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.32 (0.119) R2dN8 : 0.0387 R2N8 : 0.0174
σ : 1.04
deviance : 495.64
__
_____
C
peak time of C : 16.2
E
wheather : humidity
threshold : 59.09
memory length : 207
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.87
open length of G : 15.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
494.89 1.05 6.66 -0.943 10.4 -2.44 -1.49 1.52 1.35 16.2 59.8 255 6.16 15.9
498.17 1.04 6.65 -0.853 10.3 -2.34 -0.161 -- 1.36 16.2 60 252 6.23 15.8
494.75 1.04 6.67 -0.853 10.4 -2.32 -- 0.648 1.28 16.2 59.25 206 6.84 15.2
495.64 1.04 6.66 -0.819 10.4 -2.3 -- -- 1.32 16.2 59.09 207 6.87 15.2
2703.99 2.42 6.58 -1.56 -- -2.64 -- 0.514 0.919 -- 32.86 8625 7.8 16.2
699.37 1.24 6.67 -0.561 8.38 -- 0.949 -- 1.19 16.3 -- -- -- --
701.87 1.24 6.66 -0.552 8.39 -- -- -- 1.19 16.3 -- -- -- --
1890.13 2.02 6.45 -1.29 -- -7.12 -- -- 1.61 -- 44.57 901 11.8 19.9
513.22 1.06 6.64 -- 10.3 -2.21 -- -- 1.39 16.2 59.33 200 6.93 15.1
4498.03 3.13 6.62 -0.887 -- -- -- -- 0.971 -- -- -- -- --
709.91 1.25 6.65 -- 8.4 -- -- -- 1.26 16.3 -- -- -- --
633.11 1.17 6.56 -- -- -7.75 -- -- 1.18 -- -12.94 550 14.5 18.1
4518.78 3.14 6.59 -- -- -- -- -- 1.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 497.52 humidity 60.0 270 > th dose independent rect. 6 16
2 501.68 atmosphere 1010.0 270 < th dose independent rect. 17 6
4 502.50 temperature 30.0 270 < th dose independent rect. 16 7
7 502.91 atmosphere 1010.0 270 < th dose independent rect. 18 4
9 507.10 humidity 60.0 270 > th dose independent rect. 16 19
10 507.40 atmosphere 995.0 270 > th dose dependent rect. 22 9
12 508.51 humidity 60.0 270 > th dose independent rect. 16 7
14 508.66 humidity 50.0 90 > th dose dependent rect. 7 16
15 509.23 temperature 15.0 270 > th dose independent rect. 18 16
19 511.69 temperature 15.0 270 > th dose independent rect. 17 18
23 513.29 temperature 15.0 270 > th dose independent rect. 7 15
27 513.77 humidity 60.0 270 > th dose independent rect. 16 21
28 514.32 temperature 15.0 270 > th dose independent rect. 17 6
34 516.43 radiation 10.0 270 < th dose dependent rect. 16 6
37 517.77 atmosphere 1010.0 270 < th dose independent rect. 18 17
41 518.18 humidity 50.0 90 > th dose dependent rect. 9 14
42 519.00 temperature 15.0 270 > th dose independent rect. 18 4
46 519.96 radiation 10.0 270 < th dose dependent rect. 7 15
48 520.79 temperature 15.0 10 > th dose dependent rect. 13 7
49 520.80 radiation 1.0 270 < th dose independent rect. 16 6
59 522.38 temperature 30.0 270 < th dose independent rect. 16 19
66 523.34 temperature 10.0 270 > th dose dependent rect. 11 7
71 524.09 radiation 1.0 270 > th dose independent rect. 11 8
81 524.19 temperature 30.0 270 < th dose independent rect. 17 17
93 524.92 temperature 30.0 270 < th dose independent rect. 6 16
104 525.98 radiation 10.0 270 < th dose dependent sin 19 NA
105 526.02 radiation 1.0 270 < th dose independent rect. 11 11
138 527.84 temperature 10.0 270 > th dose dependent rect. 18 17
141 528.03 atmosphere 1015.0 90 < th dose dependent rect. 13 6
151 528.62 radiation 1.0 270 < th dose independent rect. 6 16
154 528.65 atmosphere 1015.0 270 < th dose dependent rect. 18 16
158 528.97 temperature 15.0 270 > th dose independent rect. 16 21
178 530.72 humidity 50.0 270 > th dose dependent rect. 16 6
182 530.84 humidity 90.0 10 < th dose dependent rect. 13 7
187 531.08 radiation 1.0 270 > th dose independent sin 20 NA
197 531.86 radiation 1.0 270 < th dose independent sin 20 NA
202 532.25 humidity 90.0 270 < th dose dependent rect. 11 6
215 533.56 temperature 10.0 270 > th dose dependent rect. 18 4
230 534.41 humidity 60.0 270 > th dose independent rect. 18 3
243 535.10 radiation 1.0 90 < th dose dependent sin 16 NA
245 535.13 humidity 50.0 10 > th dose dependent rect. 9 15
265 536.27 atmosphere 1015.0 10 < th dose dependent rect. 20 17
266 536.32 temperature 15.0 270 > th dose dependent rect. 13 3
267 536.36 precipitation 0.1 270 < th dose independent rect. 10 8
268 536.36 precipitation 0.1 270 < th dose dependent rect. 10 8
271 536.40 humidity 50.0 10 > th dose dependent rect. 7 17
293 537.75 radiation 1.0 90 < th dose independent sin 16 NA
296 537.85 atmosphere 1015.0 270 < th dose independent rect. 7 15
315 539.13 radiation 1.0 90 > th dose independent sin 16 NA
331 539.99 atmosphere 995.0 270 > th dose independent rect. 17 5
336 540.25 precipitation 0.1 270 < th dose independent rect. 11 6
337 540.25 precipitation 0.1 270 < th dose dependent rect. 11 6
346 540.60 atmosphere 995.0 270 > th dose independent rect. 18 16
348 540.68 temperature 10.0 270 > th dose independent rect. 10 8
349 540.68 atmosphere 1015.0 270 < th dose independent rect. 10 8
352 540.71 precipitation 0.1 270 < th dose independent rect. 22 20
353 540.71 precipitation 0.1 270 < th dose dependent rect. 22 20
359 540.91 wind 9.0 270 < th dose independent rect. 18 16
365 541.20 humidity 90.0 10 < th dose independent rect. 13 7
375 541.43 atmosphere 995.0 270 > th dose independent rect. 17 18
380 541.70 humidity 90.0 270 < th dose independent rect. 11 7
381 541.78 humidity 50.0 270 > th dose dependent rect. 18 3
396 542.11 temperature 10.0 270 > th dose independent rect. 22 19
401 542.22 wind 9.0 270 < th dose independent rect. 17 5
409 542.31 wind 9.0 270 < th dose independent rect. 7 15
417 542.63 wind 9.0 270 < th dose independent rect. 17 18
437 543.00 temperature 10.0 270 > th dose independent rect. 11 6
438 543.00 atmosphere 1015.0 270 < th dose independent rect. 11 6
462 543.64 temperature 10.0 10 > th dose dependent rect. 20 17
474 543.83 wind 7.0 270 < th dose independent rect. 22 9
481 543.93 temperature 10.0 270 > th dose dependent rect. 4 8
486 544.08 humidity 90.0 90 < th dose independent rect. 13 6
504 544.77 radiation 40.0 270 < th dose dependent rect. 22 9
507 544.95 temperature 10.0 270 > th dose independent rect. 22 9
508 544.95 temperature 30.0 270 < th dose independent rect. 22 9
509 544.95 humidity 50.0 270 > th dose independent rect. 22 9
511 544.95 atmosphere 995.0 270 > th dose independent rect. 22 9
512 544.95 radiation 40.0 270 < th dose independent rect. 22 9
515 545.08 humidity 80.0 10 < th dose dependent sin 16 NA
523 545.34 humidity 80.0 90 < th dose dependent rect. 13 19
556 546.24 radiation 40.0 270 < th dose independent rect. 18 16
563 546.41 precipitation 0.1 270 < th dose independent rect. 22 9
564 546.41 precipitation 0.1 270 < th dose dependent rect. 22 9
578 546.91 humidity 80.0 10 < th dose dependent rect. 13 11
582 546.98 humidity 80.0 90 < th dose dependent rect. 13 11
584 547.01 humidity 80.0 90 < th dose dependent sin 17 NA
587 547.04 wind 1.0 270 > th dose independent rect. 18 3
591 547.13 atmosphere 1015.0 270 < th dose dependent rect. 13 3
597 547.18 humidity 70.0 10 > th dose independent rect. 18 6
598 547.18 wind 9.0 270 < th dose independent rect. 10 8
599 547.21 humidity 80.0 10 < th dose dependent rect. 13 19
612 547.57 wind 9.0 270 < th dose independent rect. 11 6
623 547.72 atmosphere 1015.0 10 < th dose dependent rect. 13 7
635 547.99 wind 1.0 270 > th dose independent rect. 17 6
637 548.02 wind 1.0 270 > th dose independent rect. 7 15
667 548.67 wind 9.0 270 < th dose independent rect. 22 19
714 549.62 precipitation 0.1 90 < th dose independent rect. 13 6
715 549.62 precipitation 0.1 90 < th dose dependent rect. 13 6
726 549.83 temperature 10.0 270 > th dose dependent rect. 19 2
728 549.85 precipitation 0.1 270 < th dose independent rect. 18 4
729 549.85 temperature 15.0 1440 > th dose independent rect. 14 6
730 549.85 precipitation 0.1 270 < th dose dependent rect. 18 4
752 550.39 precipitation 0.1 270 < th dose independent rect. 18 16
753 550.39 precipitation 0.1 270 < th dose dependent rect. 18 16
783 551.20 atmosphere 1015.0 270 < th dose dependent rect. 18 4
833 551.72 atmosphere 995.0 270 > th dose independent rect. 6 16
852 552.19 temperature 25.0 90 > th dose independent rect. 13 6
864 552.42 temperature 20.0 270 > th dose independent rect. 5 6
882 552.97 precipitation 0.1 270 < th dose independent rect. 17 18
883 552.97 precipitation 0.1 270 < th dose dependent rect. 17 18
895 553.28 atmosphere 1015.0 270 < th dose independent rect. 23 18
910 553.53 temperature 15.0 10 > th dose independent rect. 20 17
932 554.05 temperature 25.0 10 > th dose independent rect. 13 7
937 554.13 wind 9.0 270 < th dose dependent rect. 18 3
954 554.56 humidity 70.0 10 > th dose independent rect. 18 8
988 555.51 humidity 70.0 10 > th dose independent rect. 9 15