BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0508500 Os08g0508500|Os08g0508500
         (989 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20810.2  | chr3:7275814-7278144 FORWARD LENGTH=430            271   9e-73

>AT3G20810.2 | chr3:7275814-7278144 FORWARD LENGTH=430
          Length = 429

 Score =  271 bits (694), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 160/418 (38%), Positives = 213/418 (50%), Gaps = 71/418 (16%)

Query: 22  LLREITEEGGFXXXXXXXXXXXXXXXXXXXXXXXXXWEQLHACPRSEVGRAWRDAYALAC 81
           LL+ I+ EGG+                         WEQLH+ P   V   WRDAY++AC
Sbjct: 29  LLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMA-WEQLHSGPWHSVLPVWRDAYSMAC 87

Query: 82  LHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAELEEAIARVVADRSRXXXXXXXXX 141
           LH                                R +L +++  V ++  +         
Sbjct: 88  LHVAKIHFAAGEFGEALGALDMGLIMGGMLL---RKDLHDSVLLVSSEARKMTKSLEEAS 144

Query: 142 XXXXX--------ADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRD 193
                         DV +    L   + L  VLK+LP +SL+CK++E+RS +SLE F+RD
Sbjct: 145 GDFKGERLVPEVPVDVNEVRHVLANLQLL--VLKILPCRSLTCKRVEKRSGLSLEGFLRD 202

Query: 194 YFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVE------------ELITFSQ 241
           Y+L  +PV+++  + HWPARTKW  + YL  +AG+RTVPVE            EL+TFS+
Sbjct: 203 YYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWKQELVTFSK 262

Query: 242 FLEMMWSSDCS-ANLTYLAQHPLFDQIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTV 300
           FLE M ++  S    TYLAQHPLFDQI ELR+DI +P+YC  GGGELQ LNAWFGP GTV
Sbjct: 263 FLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTV 322

Query: 301 TPLHHDLYHNLFAQGNPQILVFIQRVDHPLCFEITGMFALHQSSYSDKRLWPYPKWLHVL 360
           TPLHHD +HN+ AQ                                            V+
Sbjct: 323 TPLHHDPHHNILAQ--------------------------------------------VV 338

Query: 361 GRKYFRLYSASISNDLYPHRETMLSNISQVDLDNINVNEFPRTGDVEFMDGILEEGAL 418
           G+KY RLY + + ++LYP+ ETML N SQVDLDNI+  EFP+  ++EFMD ILEEG +
Sbjct: 339 GKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEEGEM 396



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,358,717
Number of extensions: 797965
Number of successful extensions: 2007
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2008
Number of HSP's successfully gapped: 2
Length of query: 989
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 881
Effective length of database: 8,145,641
Effective search space: 7176309721
Effective search space used: 7176309721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)