Os08g0506500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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Os08g0506500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.79 | 0.445 | 9.54 | -0.293 | 2.59 | 1.34 | 0.578 | 1.75 | -0.567 | 21.1 | 25.7 | 285 | 19.3 | -- |
| 94.82 | 0.454 | 9.57 | -0.512 | 2.58 | 1.43 | 0.704 | -- | -0.655 | 21.2 | 25.7 | 274 | 18.9 | -- |
| 90.88 | 0.444 | 9.54 | -0.312 | 2.56 | 1.36 | -- | 1.75 | -0.572 | 21.1 | 25.7 | 300 | 19.3 | -- |
| 95.6 | 0.455 | 9.57 | -0.555 | 2.55 | 1.38 | -- | -- | -0.651 | 21.2 | 25.71 | 268 | 18.6 | -- |
| 143.42 | 0.558 | 9.43 | -0.28 | -- | 2.77 | -- | 0.797 | -0.388 | -- | 9.016 | 1274 | 20.8 | -- |
| 143.41 | 0.561 | 9.51 | -0.263 | 2.77 | -- | 0.814 | -- | -0.384 | 19.8 | -- | -- | -- | -- |
| 145.31 | 0.564 | 9.51 | -0.284 | 2.76 | -- | -- | -- | -0.383 | 19.8 | -- | -- | -- | -- |
| 145.31 | 0.561 | 9.43 | -0.284 | -- | 2.76 | -- | -- | -0.383 | -- | 9.111 | 1278 | 20.9 | -- |
| 104.1 | 0.475 | 9.55 | -- | 2.56 | 1.27 | -- | -- | -0.566 | 21 | 25.8 | 271 | 18.7 | -- |
| 559.08 | 1.1 | 9.44 | -0.318 | -- | -- | -- | -- | -0.422 | -- | -- | -- | -- | -- |
| 147.44 | 0.568 | 9.5 | -- | 2.77 | -- | -- | -- | -0.351 | 19.8 | -- | -- | -- | -- |
| 147.44 | 0.566 | 9.43 | -- | -- | 2.76 | -- | -- | -0.352 | -- | 8.925 | 998 | 18.5 | -- |
| 561.74 | 1.11 | 9.44 | -- | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.52 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 3 | 85.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 37 | 93.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 42 | 94.28 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 49 | 95.17 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 16 |
| 70 | 96.78 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 85 | 97.62 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 87 | 97.70 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 16 |
| 93 | 97.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 97 | 97.86 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 112 | 98.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 146 | 98.88 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 152 | 99.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 154 | 99.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 201 | 99.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 296 | 101.30 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 303 | 101.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 383 | 102.53 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 792 | 106.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 1 |