BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0506500 Os08g0506500|Os08g0506500
         (236 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26880.1  | chr5:9457301-9459190 REVERSE LENGTH=369            193   6e-50

>AT5G26880.1 | chr5:9457301-9459190 REVERSE LENGTH=369
          Length = 368

 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 111/145 (76%), Gaps = 18/145 (12%)

Query: 71  RMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVG----------VR--------YVVVKI 112
           ++LHVVLVSP IPGNTG IARTCAASAVGLHLVG          V+        +VVVK 
Sbjct: 80  KLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKA 139

Query: 113 HDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCS 172
           H SW EF++YF  Q+GEKR++AFTKRGT IHSDFSY+ GD+L+FGSET GLP  AL DC+
Sbjct: 140 HSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCN 199

Query: 173 REGLGGGTIRIPMVETYVRCLNLSV 197
            E  GGGT+RIPMVETYVRCLNLS+
Sbjct: 200 HEPYGGGTLRIPMVETYVRCLNLSI 224



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,956,203
Number of extensions: 160790
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)