Os08g0504600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0504600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.37 | 0.151 | 11.4 | 0.506 | 0.468 | 0.52 | -0.245 | -0.134 | 0.167 | 16.8 | 80.51 | 1560 | -- | -- |
| 10.38 | 0.15 | 11.4 | 0.496 | 0.466 | 0.511 | -0.233 | -- | 0.166 | 16.8 | 80.23 | 1561 | -- | -- |
| 10.51 | 0.151 | 11.4 | 0.507 | 0.471 | 0.514 | -- | -0.0899 | 0.166 | 16.9 | 80.64 | 1561 | -- | -- |
| 10.51 | 0.151 | 11.4 | 0.495 | 0.464 | 0.5 | -- | -- | 0.163 | 16.9 | 80.92 | 1560 | -- | -- |
| 18.52 | 0.2 | 11.4 | 0.507 | -- | 0.547 | -- | 0.0601 | 0.143 | -- | 81 | 1297 | -- | -- |
| 13.32 | 0.171 | 11.4 | 0.489 | 0.434 | -- | -0.117 | -- | 0.137 | 17.1 | -- | -- | -- | -- |
| 13.35 | 0.171 | 11.4 | 0.489 | 0.434 | -- | -- | -- | 0.137 | 17.1 | -- | -- | -- | -- |
| 18.38 | 0.2 | 11.4 | 0.489 | -- | 0.584 | -- | -- | 0.164 | -- | 80.98 | 1294 | -- | -- |
| 16.7 | 0.19 | 11.4 | -- | 0.471 | 0.512 | -- | -- | 0.109 | 17 | 81.6 | 1607 | -- | -- |
| 23.2 | 0.225 | 11.4 | 0.473 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 19.64 | 0.207 | 11.4 | -- | 0.425 | -- | -- | -- | 0.0823 | 17.2 | -- | -- | -- | -- |
| 24.31 | 0.23 | 11.4 | -- | -- | 0.558 | -- | -- | 0.17 | -- | 82 | 2688 | -- | -- |
| 29.11 | 0.252 | 11.4 | -- | -- | -- | -- | -- | 0.0733 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.35 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 2 | 9.36 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 3 | 9.36 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 8 | 9.37 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 13 | 9.46 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 14 | 9.47 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 50 | 9.60 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 51 | 9.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 52 | 9.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 55 | 9.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 57 | 9.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 67 | 9.70 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 71 | 9.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 81 | 9.72 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 157 | 9.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 166 | 9.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 192 | 9.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 197 | 9.88 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 209 | 9.89 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 234 | 9.91 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 244 | 9.92 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 262 | 9.93 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 264 | 9.93 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 282 | 9.94 | temperature | 30.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 285 | 9.94 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 286 | 9.94 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 295 | 9.94 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 325 | 9.94 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 363 | 9.94 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 378 | 9.95 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 385 | 9.95 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 386 | 9.95 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 444 | 9.96 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 482 | 9.97 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 534 | 9.97 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 689 | 9.98 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 731 | 9.99 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 732 | 9.99 | radiation | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 950 | 9.99 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 959 | 10.00 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 963 | 10.00 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 1 |