BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0504600 Os08g0504600|AK064868
(684 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12640.1 | chr3:4014455-4017675 FORWARD LENGTH=639 163 3e-40
AT2G24350.1 | chr2:10361239-10364223 FORWARD LENGTH=538 72 1e-12
AT5G65260.1 | chr5:26080501-26082984 REVERSE LENGTH=221 69 1e-11
AT5G51120.2 | chr5:20779760-20781241 FORWARD LENGTH=266 67 3e-11
AT5G10350.1 | chr5:3255674-3257746 REVERSE LENGTH=218 65 1e-10
AT2G27330.1 | chr2:11695350-11696563 REVERSE LENGTH=117 54 2e-07
AT4G19610.1 | chr4:10677482-10681623 FORWARD LENGTH=817 54 3e-07
AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426 54 3e-07
>AT3G12640.1 | chr3:4014455-4017675 FORWARD LENGTH=639
Length = 638
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 104/146 (71%), Gaps = 12/146 (8%)
Query: 521 PTEDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKE 580
P EDA SRT++V+NVHFGATKD+LSRHFNKFG VLK IVT+ ATGQP+GSAY+EF KE
Sbjct: 473 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKE 532
Query: 581 SAERALSLNGTSFMARILKVVRRS---SHEAAHFYGWPGGGRTSMYARHGRMAYPRGGLP 637
+AE ALSL+GTSFM+RILK+V+ S + EAA W GGR + +Y RGG
Sbjct: 533 AAENALSLDGTSFMSRILKIVKGSNGQNQEAASSMSWSRGGRFTRAP-----SYFRGG-- 585
Query: 638 GSTFRGRAPMIAGARSLQWKREPSVT 663
RGR+ + G RS+QWKR+ + T
Sbjct: 586 --AVRGRSVVRGGGRSMQWKRDSADT 609
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 132/250 (52%), Gaps = 41/250 (16%)
Query: 15 RYFKADLTGAGVVQLSERVREKLREFVDDYTNNTLVEYVILLLEGGKRKDEAIKELDVFL 74
R F D + GV +L E V++KL+E++ DYT++ LVEYVI+LL G+RK+EA EL +FL
Sbjct: 10 RTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEEANNELKIFL 69
Query: 75 GKDSRAFISWLWDHLSVNLHLYVQTQEQLQVDNKDDEAPNELPGEQKSSELQLRSKDQTH 134
G DS +F++WLWDHL+ ++ Y + + G S L +D+
Sbjct: 70 GDDSDSFVAWLWDHLAESVDEYFSSN---------------VEGTTIKSSLISSHEDKAL 114
Query: 135 PECVSEPSTTRSRTKRDWKGIGREGNENFPLRSVLKDILHGEEKRSQKVNEIRHPP--SS 192
SE GR N R G + RSQ N PP SS
Sbjct: 115 VPLDSEYDK------------GRSDKSNGARR--------GRQWRSQPTNVSEIPPLLSS 154
Query: 193 NQRNGRKRDRDDEPQQIKRDLPLRRDVGASCRLLKFAVRDAVKAVQQTSSSTEPSSKRLR 252
++ RKR R D+ + +R+ + DV S RLL+FAVRDA+ + +SSTE S KRLR
Sbjct: 155 EAQSQRKRSRTDDSRNEQRE--AKPDV--SRRLLQFAVRDALAISRPANSSTESSLKRLR 210
Query: 253 SVVSTSSADS 262
SVVSTS+ +S
Sbjct: 211 SVVSTSTQNS 220
>AT2G24350.1 | chr2:10361239-10364223 FORWARD LENGTH=538
Length = 537
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 525 ADSRTLYVSNVHFGATKDALSRHFN-KFGAVLKVVIVTNAATGQPTGSAYVEFLHKESAE 583
++SR ++V+NV++ A K+A+S F+ K GAV V++VT+ T P G+A+V F KES
Sbjct: 441 SESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVG 500
Query: 584 RALSLNGTSFMARILKV 600
+A++L+GT F +R +KV
Sbjct: 501 KAVALSGTMFYSRPIKV 517
>AT5G65260.1 | chr5:26080501-26082984 REVERSE LENGTH=221
Length = 220
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 523 EDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKESA 582
E+ D+R+++V NV + T + + +HF G V +V I+T+ GQP G AYVEF+ E+
Sbjct: 87 EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAV 145
Query: 583 ERALSLNGTSFMARILKVVRRSSH 606
+ AL LN + R LKV+++ ++
Sbjct: 146 QEALQLNESELHGRQLKVLQKRTN 169
>AT5G51120.2 | chr5:20779760-20781241 FORWARD LENGTH=266
Length = 265
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 17/130 (13%)
Query: 523 EDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKESA 582
E+ DSR++YV NV + T + + +HF G V +V I+T+ GQP G AYVEF+ E+
Sbjct: 136 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAV 194
Query: 583 ERALSLNGTSFMARILKVVRRSSHEAAHFYGWPGGGRTSMYARHGRMAYP-RGGLPGSTF 641
+ +L LN + R +KV + ++ PG + GR P RG +PG F
Sbjct: 195 QNSLILNESELHGRQIKVSAKRTN-------VPG---MRQFRGRGRPFRPMRGFMPGVPF 244
Query: 642 -----RGRAP 646
GR P
Sbjct: 245 YPPYAYGRVP 254
>AT5G10350.1 | chr5:3255674-3257746 REVERSE LENGTH=218
Length = 217
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 523 EDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKESA 582
E+ D+R++YV NV + T + + HF G V +V I+ + GQP G AYVEF+ E+
Sbjct: 84 EEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAV 142
Query: 583 ERALSLNGTSFMARILKVVRRSSHEAAHFYGWPGGGRTSMYARHGRMAYP 632
+ AL LN + R LKV + ++ PG SM R R P
Sbjct: 143 QEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVP 192
>AT2G27330.1 | chr2:11695350-11696563 REVERSE LENGTH=117
Length = 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 527 SRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKESAERA- 585
S TL+V + F +T++ L++ F+++G VLKV ++ + +P G AYV F KE AE+A
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 586 LSLNGTSFMARILKVVRRSSHEAAH 610
L LN R+ V+ ++ A H
Sbjct: 80 LELNAQLVDGRV--VILDTTKAAKH 102
>AT4G19610.1 | chr4:10677482-10681623 FORWARD LENGTH=817
Length = 816
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 526 DSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHKESAERA 585
D+ L+V N+ + AT++ L HF+ FG + +V +V + T + G AY+ +L E A RA
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351
Query: 586 L-SLNGTSFMARILKVV 601
+ L+ +SF R+L ++
Sbjct: 352 MEELDNSSFQGRLLHIL 368
>AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426
Length = 425
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 520 HPTEDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATGQPTGSAYVEFLHK 579
HP + RTL++ ++ + ++ L+ F++ G ++ V ++ N TGQP G ++EF+
Sbjct: 16 HPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISH 75
Query: 580 ESAERAL-SLNGT 591
+AER L + NGT
Sbjct: 76 AAAERTLQTYNGT 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,188,704
Number of extensions: 526686
Number of successful extensions: 1544
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 10
Length of query: 684
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 579
Effective length of database: 8,227,889
Effective search space: 4763947731
Effective search space used: 4763947731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)