Os08g0502700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class V family protein.
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Os08g0502700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class V family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.61 | 0.366 | 15.8 | -0.205 | 0.906 | -0.209 | -0.137 | -1.87 | -0.392 | 21.2 | 21.5 | 3109 | -- | -- |
| 66.43 | 0.383 | 15.7 | 0.298 | 0.883 | -0.11 | -0.146 | -- | -0.255 | 21.1 | 22.4 | 1631 | -- | -- |
| 60.68 | 0.363 | 15.8 | -0.199 | 0.906 | -0.209 | -- | -1.86 | -0.392 | 21.3 | 21.52 | 3103 | -- | -- |
| 65.32 | 0.379 | 15.7 | 0.313 | 0.897 | -0.166 | -- | -- | -0.205 | 20.8 | 24.7 | 2876 | -- | -- |
| 108.29 | 0.487 | 15.7 | 0.228 | -- | -0.318 | -- | -0.528 | -0.249 | -- | 21.6 | 3038 | -- | -- |
| 67.16 | 0.384 | 15.7 | 0.259 | 0.909 | -- | -0.124 | -- | -0.291 | 21.3 | -- | -- | -- | -- |
| 67.22 | 0.384 | 15.7 | 0.264 | 0.909 | -- | -- | -- | -0.291 | 21.3 | -- | -- | -- | -- |
| 100.65 | 0.467 | 15.7 | 0.101 | -- | 0.643 | -- | -- | -0.3 | -- | 28.1 | 730 | -- | -- |
| 67.82 | 0.386 | 15.7 | -- | 0.898 | -0.132 | -- | -- | -0.257 | 20.9 | 24.7 | 2876 | -- | -- |
| 115.33 | 0.502 | 15.7 | 0.267 | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
| 69.05 | 0.389 | 15.7 | -- | 0.909 | -- | -- | -- | -0.32 | 21.3 | -- | -- | -- | -- |
| 100.5 | 0.467 | 15.7 | -- | -- | 0.581 | -- | -- | -0.421 | -- | 26.6 | 710 | -- | -- |
| 117.22 | 0.505 | 15.7 | -- | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 2 | 57.16 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 8 | 57.33 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 14 | 57.45 | humidity | 80 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 15 | 57.46 | humidity | 80 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 101 | 58.53 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 113 | 58.85 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 117 | 58.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 126 | 59.08 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 127 | 59.08 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 128 | 59.09 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 134 | 59.17 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 135 | 59.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 136 | 59.18 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 142 | 59.23 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 153 | 59.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 167 | 59.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 180 | 59.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 185 | 59.58 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 193 | 59.62 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 282 | 59.98 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 315 | 60.05 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 321 | 60.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 327 | 60.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 3 |
| 340 | 60.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 343 | 60.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 344 | 60.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 346 | 60.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 350 | 60.12 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 380 | 60.15 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 384 | 60.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 395 | 60.18 | wind | 3 | 14400 | > th | dose independent | sin | 6 | NA |
| 454 | 60.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 494 | 60.30 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 2 |
| 538 | 60.36 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 557 | 60.39 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 561 | 60.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 579 | 60.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 5 |
| 591 | 60.44 | wind | 3 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 597 | 60.45 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 631 | 60.50 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 651 | 60.50 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 751 | 60.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 757 | 60.63 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 789 | 60.66 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 802 | 60.67 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 15 |
| 810 | 60.68 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 817 | 60.69 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 847 | 60.72 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 858 | 60.74 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 868 | 60.75 | humidity | 50 | 270 | > th | dose independent | rect. | 3 | 20 |
| 874 | 60.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 888 | 60.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 890 | 60.78 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 905 | 60.79 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 22 |
| 912 | 60.79 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 916 | 60.80 | humidity | 70 | 30 | > th | dose independent | rect. | 17 | 7 |
| 934 | 60.82 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 943 | 60.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 10 |
| 953 | 60.84 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 957 | 60.84 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 981 | 60.86 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 983 | 60.86 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 990 | 60.87 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |