BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0502700 Os08g0502700|AK064774
         (402 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G13360.1  | chr2:5539417-5540902 REVERSE LENGTH=402            683   0.0  

>AT2G13360.1 | chr2:5539417-5540902 REVERSE LENGTH=402
          Length = 401

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/400 (81%), Positives = 360/400 (90%)

Query: 3   DYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKXXXXX 62
           DY+YGPGR+HLFVPGPVNIP+ VIRAM+R NEDYRSPA+PALTKTLLEDVK+IFK     
Sbjct: 2   DYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGT 61

Query: 63  XXXXXXXXXXAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGA 122
                     AWESALTNTLSPGD+IVSFLIGQFSLLWIDQQ+RLNFNVDVVESDWG GA
Sbjct: 62  PFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGA 121

Query: 123 DLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSIC 182
           +L  L  KL QD +H+IKAICIVHNETATGVTND+SAVR +LD ++HPALLLVDGVSSIC
Sbjct: 122 NLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSIC 181

Query: 183 ALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSVRVFFDWKDYLKFY 242
           ALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEA+KT+KS++VFFDW DYLKFY
Sbjct: 182 ALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKFY 241

Query: 243 KMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKE 302
           K+GTYWPYTPSIQLLYGLR ALDLIFEEGLEN+I RH RLG ATRLAVEAWGLKNCTQKE
Sbjct: 242 KLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKE 301

Query: 303 EWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMG 362
           EW S+TVTAV+VPP+ID +EIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQL+G
Sbjct: 302 EWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLG 361

Query: 363 ALSGVEMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 402
            L+GVEM+LKD+GYPV +GSGVAAA+ YL +  PLIPSRI
Sbjct: 362 CLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,293,978
Number of extensions: 322305
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)