Os08g0486100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potential copper-transporting ATPase PAA1 (EC 3.6.3.4).
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Os08g0486100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potential copper-transporting ATPase PAA1 (EC 3.6.3.4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.65 | 0.238 | 11.1 | -0.614 | 0.814 | 1.04 | -0.117 | -0.126 | -0.275 | 22.5 | 25.23 | 78 | -- | -- |
| 25.67 | 0.236 | 11.1 | -0.623 | 0.805 | 1.05 | -0.144 | -- | -0.277 | 22.5 | 25.2 | 74 | -- | -- |
| 25.69 | 0.236 | 11.1 | -0.598 | 0.812 | 1.04 | -- | -0.196 | -0.272 | 22.5 | 25.23 | 75 | -- | -- |
| 25.75 | 0.236 | 11.1 | -0.627 | 0.811 | 1.05 | -- | -- | -0.281 | 22.5 | 25.13 | 73 | -- | -- |
| 56.56 | 0.352 | 11 | -0.462 | -- | 1.42 | -- | -0.442 | -0.172 | -- | 28.04 | 21 | -- | -- |
| 41.71 | 0.303 | 11.1 | -0.885 | 0.95 | -- | -0.0938 | -- | -0.491 | 23.1 | -- | -- | -- | -- |
| 41.74 | 0.303 | 11.1 | -0.882 | 0.95 | -- | -- | -- | -0.491 | 23.1 | -- | -- | -- | -- |
| 56.69 | 0.352 | 11 | -0.532 | -- | 1.44 | -- | -- | -0.183 | -- | 27.73 | 10 | -- | -- |
| 35.12 | 0.276 | 11.1 | -- | 0.779 | 1.31 | -- | -- | -0.168 | 22.3 | 25.16 | 89 | -- | -- |
| 98.1 | 0.463 | 11.1 | -0.859 | -- | -- | -- | -- | -0.483 | -- | -- | -- | -- | -- |
| 62.23 | 0.369 | 11.1 | -- | 0.942 | -- | -- | -- | -0.393 | 23.1 | -- | -- | -- | -- |
| 63.69 | 0.373 | 11 | -- | -- | 1.59 | -- | -- | -0.0971 | -- | 27.73 | 10 | -- | -- |
| 117.57 | 0.506 | 11.1 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 25.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 25.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 25.69 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 7 | 25.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 10 | 25.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 12 | 25.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 14 | 25.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 19 | 25.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 22 | 25.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 31 | 25.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 47 | 25.95 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 54 | 26.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 61 | 26.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 62 | 26.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 83 | 26.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 10 |
| 84 | 26.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 138 | 26.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 139 | 26.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 156 | 26.41 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 197 | 26.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 209 | 26.46 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 294 | 26.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 17 |
| 483 | 26.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 525 | 26.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 620 | 26.74 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 644 | 26.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 691 | 26.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 692 | 26.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 699 | 26.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 725 | 26.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 903 | 26.83 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 998 | 26.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |