BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0486100 Os08g0486100|AK059217
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33520.2 | chr4:16118993-16125849 FORWARD LENGTH=950 222 1e-58
AT5G21930.1 | chr5:7243129-7248721 FORWARD LENGTH=884 125 2e-29
AT1G63440.1 | chr1:23527655-23531109 FORWARD LENGTH=996 112 2e-25
AT5G44790.1 | chr5:18075846-18079817 REVERSE LENGTH=1002 95 2e-20
AT4G30110.1 | chr4:14720253-14724577 REVERSE LENGTH=952 62 1e-10
AT2G19110.1 | chr2:8279478-8286255 FORWARD LENGTH=1173 59 1e-09
AT4G37270.1 | chr4:17541987-17546352 REVERSE LENGTH=820 47 5e-06
>AT4G33520.2 | chr4:16118993-16125849 FORWARD LENGTH=950
Length = 949
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/177 (64%), Positives = 135/177 (76%), Gaps = 1/177 (0%)
Query: 2 VYMLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAA 61
VYMLSGDK++AA VAS+VGI ++VIA VKP EKK+FI+ELQK K+VAMVGDGINDAA
Sbjct: 755 VYMLSGDKRNAANYVASVVGINHERVIAGVKPAEKKNFINELQKNKKIVAMVGDGINDAA 814
Query: 62 ALASXXXXXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYNI 121
ALAS LMGNRL+QL+DA+ELS++TM+TVKQNLWWAF YNI
Sbjct: 815 ALASSNVGVAMGGGAGAASEVSPVVLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNI 874
Query: 122 VGLPIAAGALLPVTGTVLTPSIAGALMGFSSVGVMANSLFLRMR-LSSRQQPIHKPQ 177
VG+PIAAG LLP+TGT+LTPS+AGALMG SS+GVM NSL LR R S+R KP+
Sbjct: 875 VGIPIAAGVLLPLTGTMLTPSMAGALMGVSSLGVMTNSLLLRYRFFSNRNDKNVKPE 931
>AT5G21930.1 | chr5:7243129-7248721 FORWARD LENGTH=884
Length = 883
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 4 MLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAAAL 63
+LSGD++ A VA VGI+++ + P +K FIS LQ VAMVGDGINDA +L
Sbjct: 711 LLSGDREGAVATVAKNVGIKSESTNYSLSPEKKFEFISNLQSSGHRVAMVGDGINDAPSL 770
Query: 64 ASXXX--XXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYNI 121
A L+ N+LS +VDAL L++ TM V QNL WA YN+
Sbjct: 771 AQADVGIALKIEAQENAASNAASVILVRNKLSHVVDALSLAQATMSKVYQNLAWAIAYNV 830
Query: 122 VGLPIAAGALLPVTGTVLTPSIAGALMGFSSVGVMANSLFLRMRLS 167
+ +PIAAG LLP +TPS++G LM SS+ V++NSL L++ S
Sbjct: 831 ISIPIAAGVLLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQLHKS 876
>AT1G63440.1 | chr1:23527655-23531109 FORWARD LENGTH=996
Length = 995
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 4 MLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAAAL 63
M++GD A ++A VGI D VIAE KP +K + ELQ +VAMVGDGIND+ AL
Sbjct: 817 MVTGDNWGTANSIAREVGI--DSVIAEAKPEQKAEKVKELQAAGHVVAMVGDGINDSPAL 874
Query: 64 ASXXXXXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYNIVG 123
+ LM + L ++ A++LS++T ++ N WA YN++G
Sbjct: 875 VAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMG 934
Query: 124 LPIAAGALLPVTGTVLTPSIAGALMGFSSVGVMANSLFLR 163
+PIAAG L P T L P IAGA M SSV V+ SL L+
Sbjct: 935 IPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCCSLLLK 974
>AT5G44790.1 | chr5:18075846-18079817 REVERSE LENGTH=1002
Length = 1001
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 4 MLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAAAL 63
M++GD A VA VGI+ V AEV P K I LQK+ VAMVGDGIND+ AL
Sbjct: 828 MVTGDNWRTARAVAKEVGIE--DVRAEVMPAGKADVIRSLQKDGSTVAMVGDGINDSPAL 885
Query: 64 ASXXXXXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYNIVG 123
A+ LM N L ++ A++LS++T+ ++ N +A YN+V
Sbjct: 886 AAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVS 945
Query: 124 LPIAAGALLPVTGTVLTPSIAGALM 148
+PIAAG PV L P AGA M
Sbjct: 946 IPIAAGVFFPVLRVQLPPWAAGACM 970
>AT4G30110.1 | chr4:14720253-14724577 REVERSE LENGTH=952
Length = 951
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 2 VYMLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAA 61
+ ML+GD +AAM+ +G D V AE+ P +K I +L++E AMVGDG+NDA
Sbjct: 539 IAMLTGDNHAAAMHAQEQLGNAMDIVRAELLPEDKSEIIKQLKREEGPTAMVGDGLNDAP 598
Query: 62 ALASXXX-XXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYN 120
ALA+ LM N + ++ A++L+K R V +N+ +
Sbjct: 599 ALATADIGISMGVSGSALATETGNIILMSNDIRRIPQAIKLAKRAKRKVVENVVISITMK 658
Query: 121 -------IVGLPIAAGALLPVTGTVL 139
G P+ A+L GT L
Sbjct: 659 GAILALAFAGHPLIWAAVLADVGTCL 684
>AT2G19110.1 | chr2:8279478-8286255 FORWARD LENGTH=1173
Length = 1172
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 4 MLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKEHKLVAMVGDGINDAAAL 63
ML+GD ++AAM+ +G D V ++ P +K I E +KE AMVGDG+NDA AL
Sbjct: 551 MLTGDNQAAAMHAQEQLGNVLDVVHGDLLPEDKSRIIQEFKKEGP-TAMVGDGVNDAPAL 609
Query: 64 ASX-XXXXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQNLWWAFLYN-- 120
A+ LM N + ++ A++L++ R V +N+ + +
Sbjct: 610 ATADIGISMGISGSALATQTGNIILMSNDIRRIPQAVKLARRARRKVVENVCLSIILKAG 669
Query: 121 -----IVGLPIAAGALLPVTGTVL 139
G P+ A+L GT L
Sbjct: 670 ILALAFAGHPLIWAAVLVDVGTCL 693
>AT4G37270.1 | chr4:17541987-17546352 REVERSE LENGTH=820
Length = 819
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 2 VYMLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQKE-HKLVAMVGDGINDA 60
V ML+GD S+A VA+ VGI +V +KP +K + + + +E + MVG+GINDA
Sbjct: 630 VMMLTGDHDSSAWRVANAVGIT--EVYCNLKPEDKLNHVKNIAREAGGGLIMVGEGINDA 687
Query: 61 AALASXXX-XXXXXXXXXXXXXXXXXXLMGNRLSQLVDALELSKETMRTVKQN------- 112
ALA+ L+ + ++ + + S++T VKQN
Sbjct: 688 PALAAATVGIVLAQRASATAIAVADILLLRDNITGVPFCVAKSRQTTSLVKQNVALALTS 747
Query: 113 LWWAFLYNIVGL-PIAAGALLPVTGTVL 139
++ A L +++G P+ LL GT+L
Sbjct: 748 IFLAALPSVLGFVPLWLTVLLHEGGTLL 775
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,329,290
Number of extensions: 105453
Number of successful extensions: 407
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)