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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0477900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0282) R2 : 0.000718
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.034 (0.0595) R2dN8 : 0.000927 R2N8 : 0.000718
σ : 0.532
deviance : 129.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124 0.523 3.45 -0.343 0.18 1.19 0.0319 -5.31 0.0542 6.78 1000 745 -- --
125.44 0.522 3.4 -0.0814 0.164 0.334 0.0355 -- 0.0312 7.08 1001 4185 -- --
124.01 0.519 3.45 -0.343 0.18 1.19 -- -5.31 0.0541 6.75 1000 745 -- --
125.2 0.521 3.39 -0.066 0.172 0.373 -- -- 0.0591 6.88 1001 4944 -- --
125.68 0.522 3.46 -0.36 -- 1.26 -- -5.73 0.0567 -- 999.9 763 -- --
128.24 0.531 3.4 -0.00666 0.177 -- 0.017 -- 0.0301 6.26 -- -- -- --
128.24 0.53 3.4 -0.0065 0.177 -- -- -- 0.03 6.23 -- -- -- --
126.78 0.524 3.39 -0.0544 -- 0.375 -- -- 0.0667 -- 1001 4944 -- --
125.2 0.521 3.39 -- 0.177 0.418 -- -- 0.0691 6.23 1001 5001 -- --
129.87 0.532 3.4 -0.00166 -- -- -- -- 0.0339 -- -- -- -- --
128.24 0.53 3.4 -- 0.177 -- -- -- 0.0307 6.23 -- -- -- --
126.83 0.525 3.39 -- -- 0.422 -- -- 0.073 -- 1001 5000 -- --
129.87 0.532 3.4 -- -- -- -- -- 0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.42 radiation 20.0 90 > th dose independent rect. 6 1
15 115.42 radiation 20.0 90 > th dose dependent rect. 6 1
29 115.43 wind 5.0 90 > th dose independent rect. 6 2
32 115.44 wind 5.0 90 > th dose dependent rect. 7 1
37 115.62 wind 5.0 30 > th dose dependent rect. 1 7
57 116.40 wind 5.0 30 > th dose independent rect. 1 7
65 116.79 wind 5.0 10 > th dose independent rect. 7 1
84 118.38 humidity 80.0 90 < th dose dependent rect. 6 2
110 119.98 humidity 80.0 90 < th dose independent rect. 6 2
113 120.10 humidity 80.0 10 < th dose independent rect. 6 2
160 120.99 temperature 20.0 270 < th dose dependent rect. 4 3
162 121.04 atmosphere 1000.0 720 > th dose independent rect. 23 16
189 121.43 radiation 20.0 720 > th dose independent rect. 16 1
225 121.74 temperature 10.0 720 > th dose independent rect. 3 8
226 121.74 atmosphere 995.0 720 > th dose independent rect. 3 8
227 121.74 temperature 10.0 720 > th dose independent rect. 11 16
230 121.75 temperature 10.0 720 > th dose independent rect. 15 8
231 121.75 temperature 10.0 720 > th dose independent rect. 23 16
236 121.79 humidity 80.0 14400 < th dose dependent rect. 7 1
259 122.03 wind 9.0 720 < th dose independent rect. 3 8
261 122.04 humidity 50.0 720 > th dose independent rect. 23 16
268 122.13 atmosphere 1000.0 720 > th dose independent rect. 7 8
270 122.18 humidity 90.0 720 > th dose independent rect. 3 1
276 122.27 temperature 20.0 270 < th dose independent rect. 5 2
279 122.31 humidity 50.0 720 > th dose independent rect. 3 8
281 122.33 humidity 50.0 720 > th dose dependent rect. 23 6
283 122.35 atmosphere 1015.0 720 < th dose independent rect. 3 8
287 122.45 wind 9.0 720 < th dose independent rect. 15 8
290 122.46 radiation 10.0 720 > th dose dependent rect. 16 1
310 122.54 humidity 80.0 10 < th dose independent rect. 2 6
312 122.55 atmosphere 1000.0 720 > th dose independent rect. 17 18
316 122.57 radiation 10.0 43200 < th dose dependent rect. 23 1
319 122.62 humidity 90.0 720 > th dose independent rect. 2 3
342 122.71 atmosphere 1000.0 720 > th dose independent rect. 17 16
344 122.71 humidity 80.0 14400 < th dose dependent rect. 2 7
382 122.86 precipitation 0.1 720 < th dose independent rect. 15 8
388 122.86 precipitation 0.1 720 < th dose dependent rect. 15 8
390 122.88 wind 5.0 14400 < th dose independent rect. 11 1
409 122.98 temperature 25.0 10 < th dose dependent rect. 6 4
411 122.99 humidity 80.0 10 < th dose independent rect. 24 8
427 123.05 temperature 20.0 270 < th dose dependent sin 1 NA
431 123.08 humidity 80.0 720 > th dose dependent rect. 3 1
452 123.10 precipitation 0.1 720 < th dose independent rect. 11 16
453 123.10 temperature 25.0 90 < th dose dependent rect. 7 2
455 123.10 precipitation 0.1 720 < th dose dependent rect. 11 16
461 123.12 humidity 80.0 10 < th dose independent rect. 24 10
489 123.16 atmosphere 1000.0 720 > th dose independent rect. 13 22
508 123.23 wind 9.0 720 < th dose independent rect. 11 6
515 123.25 atmosphere 1000.0 30 > th dose independent rect. 23 23
518 123.27 wind 5.0 14400 < th dose independent rect. 10 5
519 123.27 wind 9.0 720 < th dose independent rect. 5 18
527 123.31 wind 5.0 14400 > th dose independent rect. 11 1
528 123.31 wind 5.0 14400 > th dose independent rect. 10 6
530 123.32 radiation 1.0 720 < th dose independent rect. 23 6
537 123.33 radiation 1.0 720 < th dose dependent rect. 23 6
541 123.34 radiation 1.0 43200 < th dose dependent rect. 3 1
544 123.35 atmosphere 1000.0 720 > th dose independent rect. 16 23
573 123.38 temperature 25.0 10 < th dose dependent rect. 6 12
574 123.39 humidity 70.0 14400 > th dose independent rect. 8 1
576 123.39 atmosphere 1000.0 720 > th dose independent rect. 3 16
578 123.40 temperature 10.0 720 > th dose independent rect. 11 6
579 123.40 atmosphere 1015.0 720 < th dose independent rect. 11 6
582 123.40 temperature 10.0 720 > th dose independent rect. 17 18
598 123.41 temperature 10.0 720 > th dose independent rect. 23 6
599 123.41 temperature 30.0 720 < th dose independent rect. 23 6
600 123.41 humidity 50.0 720 > th dose independent rect. 23 6
603 123.41 humidity 90.0 720 < th dose independent rect. 1 6
604 123.41 atmosphere 995.0 720 > th dose independent rect. 23 6
609 123.41 temperature 10.0 720 > th dose independent rect. 5 18
611 123.42 wind 9.0 720 < th dose independent rect. 23 6
630 123.48 humidity 60.0 1440 > th dose independent rect. 19 13
657 123.52 radiation 40.0 720 < th dose independent rect. 15 8
673 123.55 temperature 20.0 720 > th dose independent rect. 11 6
674 123.55 atmosphere 995.0 720 > th dose independent rect. 15 8
679 123.56 humidity 70.0 14400 > th dose independent rect. 4 5
682 123.56 humidity 70.0 14400 > th dose independent rect. 24 9
693 123.57 atmosphere 1000.0 720 > th dose independent rect. 23 20
698 123.58 humidity 60.0 720 < th dose independent rect. 18 1
720 123.58 humidity 60.0 720 < th dose dependent rect. 18 1
747 123.62 humidity 70.0 14400 < th dose independent rect. 8 1
778 123.70 atmosphere 1000.0 720 > th dose independent rect. 23 23
781 123.71 atmosphere 1000.0 720 > th dose independent rect. 17 2
783 123.71 atmosphere 1000.0 720 < th dose independent rect. 24 15
787 123.72 atmosphere 1000.0 720 < th dose independent sin 4 NA
804 123.74 atmosphere 1000.0 720 > th dose independent rect. 7 13
806 123.75 humidity 50.0 1440 > th dose independent rect. 17 17
807 123.75 atmosphere 1000.0 720 > th dose independent rect. 21 23
813 123.76 atmosphere 1000.0 720 > th dose independent rect. 17 8
842 123.81 atmosphere 1015.0 720 < th dose independent rect. 5 18
845 123.82 wind 1.0 10 > th dose independent rect. 10 10
873 123.86 precipitation 0.1 720 < th dose independent rect. 3 8
876 123.86 atmosphere 1000.0 720 > th dose independent rect. 8 11
878 123.86 precipitation 0.1 720 < th dose dependent rect. 3 8
905 123.89 humidity 50.0 1440 < th dose dependent rect. 17 18
907 123.90 temperature 20.0 270 < th dose independent rect. 4 6
913 123.90 atmosphere 1000.0 720 < th dose independent rect. 15 21
932 123.91 humidity 90.0 90 < th dose independent rect. 2 15
933 123.91 humidity 50.0 1440 < th dose independent rect. 16 19
968 123.95 radiation 10.0 10 < th dose independent rect. 18 14
979 123.96 precipitation 0.1 720 < th dose independent rect. 11 6
989 123.96 precipitation 0.1 720 < th dose dependent rect. 11 6
996 123.97 wind 9.0 720 < th dose independent rect. 11 16