Os08g0476300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os08g0476300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.79 | 0.685 | 8.69 | -6.09 | 1.58 | -2.29 | -0.0958 | -7.65 | -0.69 | 6.32 | 1.05 | 11564 | -- | -- |
| 261.92 | 0.754 | 8.5 | -4.66 | 1.69 | -1.09 | -0.756 | -- | -0.455 | 6.43 | 10.01 | 12772 | -- | -- |
| 207.77 | 0.671 | 8.7 | -5.97 | 1.56 | -2.37 | -- | -7.67 | -0.652 | 6.33 | 1.05 | 13073 | -- | -- |
| 258.02 | 0.748 | 8.51 | -4.47 | 1.74 | -1.12 | -- | -- | -0.365 | 6.12 | 10 | 12806 | -- | -- |
| 269.28 | 0.764 | 8.6 | -5.73 | -- | -3.12 | -- | -7.51 | -0.161 | -- | 1.141 | 19442 | -- | -- |
| 319.66 | 0.838 | 8.58 | -4.73 | 1.53 | -- | -0.262 | -- | -0.72 | 6.36 | -- | -- | -- | -- |
| 319.83 | 0.837 | 8.58 | -4.73 | 1.53 | -- | -- | -- | -0.72 | 6.35 | -- | -- | -- | -- |
| 301.48 | 0.809 | 8.51 | -3.95 | -- | -2.48 | -- | -- | 0.0633 | -- | 1.932 | 19481 | -- | -- |
| 735.64 | 1.26 | 8.51 | -- | 1.44 | -2.09 | -- | -- | 0.36 | 5.76 | 10.01 | 12781 | -- | -- |
| 441.74 | 0.982 | 8.61 | -4.69 | -- | -- | -- | -- | -0.687 | -- | -- | -- | -- | -- |
| 909.28 | 1.41 | 8.46 | -- | 1.47 | -- | -- | -- | -0.193 | 6.52 | -- | -- | -- | -- |
| 395.45 | 0.926 | 8.2 | -- | -- | -3.97 | -- | -- | 1.16 | -- | 0.68 | 47520 | -- | -- |
| 1021.67 | 1.49 | 8.49 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.50 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 194.53 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 3 | 194.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 4 | 194.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 5 | 194.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 6 | 194.96 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 9 | 195.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 16 | 195.69 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 195.73 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 35 | 196.72 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 37 | 196.88 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 43 | 197.12 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 44 | 197.15 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 45 | 197.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 58 | 197.25 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 63 | 197.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 67 | 197.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 80 | 197.38 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 93 | 197.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 99 | 197.47 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 105 | 197.49 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 132 | 197.62 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 150 | 197.72 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 198 | 197.91 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 200 | 197.92 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 214 | 197.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 216 | 197.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 259 | 198.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 260 | 198.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 264 | 198.06 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 272 | 198.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 279 | 198.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 289 | 198.19 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 356 | 198.56 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 357 | 198.56 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 390 | 198.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 396 | 198.82 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 404 | 198.84 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 410 | 198.86 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 442 | 199.04 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 450 | 199.11 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 470 | 199.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 475 | 199.24 | humidity | 80.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 477 | 199.25 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 483 | 199.28 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 485 | 199.29 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 498 | 199.33 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 502 | 199.34 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 506 | 199.36 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 542 | 199.48 | radiation | 1.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 560 | 199.57 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 565 | 199.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 571 | 199.63 | radiation | 1.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 609 | 199.73 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 640 | 199.83 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 667 | 199.87 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 670 | 199.88 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 777 | 200.12 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 793 | 200.16 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 813 | 200.19 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 832 | 200.29 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 833 | 200.29 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 836 | 200.30 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 887 | 200.41 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 927 | 200.48 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 936 | 200.49 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 946 | 200.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 958 | 200.52 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 983 | 200.55 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 997 | 200.57 | temperature | 15.0 | 43200 | > th | dose dependent | sin | 8 | NA |