BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0476300 Os08g0476300|AK105359
         (257 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50560.1  | chr3:18761247-18763835 REVERSE LENGTH=273          297   5e-81
AT5G19200.1  | chr5:6458995-6460690 FORWARD LENGTH=332             68   6e-12
AT3G06060.1  | chr3:1828296-1830160 REVERSE LENGTH=327             62   3e-10
AT1G10310.1  | chr1:3381733-3383874 REVERSE LENGTH=243             52   3e-07
AT3G26760.1  | chr3:9843639-9844899 FORWARD LENGTH=301             47   8e-06

>AT3G50560.1 | chr3:18761247-18763835 REVERSE LENGTH=273
          Length = 272

 Score =  297 bits (760), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/271 (57%), Positives = 194/271 (71%), Gaps = 24/271 (8%)

Query: 1   MLRSVSGSNSS-RGIAAVVGVGPRLGSAVARKFASEGYTVAILSRDLEKLSQLAEEIAQE 59
           M+R+V  S+S  +GIAAVVGVGP+LG ++ARKFA EGYTVAIL+RDL +LS++AEEIA+E
Sbjct: 1   MMRNVGSSSSGSKGIAAVVGVGPKLGRSIARKFAHEGYTVAILARDLGRLSRVAEEIARE 60

Query: 60  AKAQVFALRVDCADARSVREAFEGVLSLGPVEVLVYNACEPPADGDGDASPRPTPFLAIS 119
            KAQVFA+R+DCAD RSVREAFEGVLSLG VEVLVYNA          AS  PT F  I 
Sbjct: 61  EKAQVFAIRIDCADPRSVREAFEGVLSLGFVEVLVYNAYH-----SSYASHHPTSFTHIP 115

Query: 120 PDAFHRALAVSAAGAFYCAHQVIPGMVERGRGTVIFTGSSASVTGYAGYSDLSCGKFALR 179
             +F  +++VS   AF CA QV PGM+E+G+GT++FTG SAS+ G AG+S+L CGKFALR
Sbjct: 116 FQSFQTSISVSVFAAFLCAQQVTPGMMEKGKGTILFTGCSASLNGIAGFSELCCGKFALR 175

Query: 180 GLSQSLAKEFQPAGVHIAHMIIDGVIGEPRSG----RGRCGGETASSA------------ 223
            LSQ LAKE+Q  G+H+AH+IIDGV+G PR      RG    ++ +              
Sbjct: 176 ALSQCLAKEYQAFGIHVAHVIIDGVVGPPRETNIPPRGMVAEQSFNVGGEDGEGEGESSG 235

Query: 224 --GADPDAVAQSYWHVHAQDRSAWTQEMDIR 252
             G DPD +AQ+YW++H QDR AWT E+DIR
Sbjct: 236 VMGMDPDVLAQTYWYLHVQDRRAWTHELDIR 266



>AT5G19200.1 | chr5:6458995-6460690 FORWARD LENGTH=332
          Length = 331

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)

Query: 24  LGSAVARKFASEGYTVAILSRDLEKLSQLAEEIAQEAKAQVFALRVDCADARSVREAFEG 83
           +G A+A +  SEG  V+IL+R  EKL++    I      +V     D  D  +V +A + 
Sbjct: 49  IGLALAHRAVSEGAKVSILARSTEKLAEAKRSIQLATGVEVATFSADVRDYDAVSKAID- 107

Query: 84  VLSLGPVEVLVYNACEPPADGDGDASPRPTPFLAISPDAFHRALAVSAAGAFYCAHQVIP 143
               GP++VL+ N            SP    F+          + V+  G+F      +P
Sbjct: 108 --ESGPIDVLIVNQGVFIGKELEKQSPEEVKFM----------IDVNLTGSFNVIKAALP 155

Query: 144 GMVER-GRG--TVIFTGSSASVTGYAGYSDLSCGKFALRGLSQSLAKEFQPAGVHIAHM 199
            M  R GRG  ++    S A   G  GY+  S  KF L+GL+Q+L +E    G+H+  +
Sbjct: 156 AMKAREGRGPASISLVSSQAGQAGIYGYTAYSASKFGLQGLAQALQQEVISDGIHVTLL 214



>AT3G06060.1 | chr3:1828296-1830160 REVERSE LENGTH=327
          Length = 326

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 16/176 (9%)

Query: 24  LGSAVARKFASEGYTVAILSRDLEKLSQLAEEIAQEAKAQVFALRVDCADARSVREAFEG 83
           +G A+A + ASEG  V+IL+R   KL +  + I      +V     D  D  +V +A + 
Sbjct: 51  IGLALAHRAASEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAID- 109

Query: 84  VLSLGPVEVLVYNACEPPADGDGDASPRPTPFLAISPDAFHRALAVSAAGAFYCAHQVIP 143
               GP++VL+ N     A      SP    F           + V+  G+F      +P
Sbjct: 110 --ESGPIDVLIVNQGVFTAKELVKHSPEDVKF----------TIDVNLVGSFNVIKAALP 157

Query: 144 GMV---ERGRGTVIFTGSSASVTGYAGYSDLSCGKFALRGLSQSLAKEFQPAGVHI 196
            M    +RG  ++    S A   G  GY+  S  KF L+GL+Q+L +E     +H+
Sbjct: 158 AMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKFGLQGLAQALQQEVISDDIHV 213



>AT1G10310.1 | chr1:3381733-3383874 REVERSE LENGTH=243
          Length = 242

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 17  VVGVGPRLGSAVARKFASEGYTVAILSRDLEKLSQLAEEIAQEAKAQVFALRVDCADARS 76
           + GV   LG A+A + A  G+TV   +R  EKL+ L  E++         L  D     S
Sbjct: 22  ITGVSKGLGRALALELAKRGHTVIGCARSQEKLTALQSELSSSTNH--LLLTADVKSNSS 79

Query: 77  VREAFEGVLSLGPVEVLVYNACEPPADGDGDASPRPTPFLAISPDAFHRALAVSAAGAFY 136
           V E    ++    V  ++ N        +     + +    +S + F   +  +  G   
Sbjct: 80  VEEMAHTIVEKKGVPDIIVN--------NAGTINKNSKIWEVSAEDFDNVMDTNVKGVAN 131

Query: 137 CAHQVIPGMVERGRGTVIFTGSSASVTGYAGYSDLSCGKFALRGLSQSLAKEF 189
                IP M+ R +G ++   S    +G A  +     K+A+ GLS+++AKE 
Sbjct: 132 VLRHFIPLMLPRKQGIIVNMSSGWGRSGAALVAPYCASKWAIEGLSRAVAKEV 184



>AT3G26760.1 | chr3:9843639-9844899 FORWARD LENGTH=301
          Length = 300

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 1   MLRSVSGSNSSRGIAAVVGVGPRLGSAVARKFASEGYTVAILSRDLEKLSQLAEEIAQEA 60
           +L S S       +A + G    +G A A +F S+G  V I+  D E    +A E+   A
Sbjct: 27  LLYSTSSRKLEGKVAVITGGASGIGKATAEEFVSQGAQVIIVDIDEEAGHMVATELGSAA 86

Query: 61  KAQVFALRVDCADARSVREAFE-GVLSLGPVEVLVYNA-----CEPPADGDGDASPRPTP 114
                 LR D  +   + +A E  V   G ++V++ +A       PP+  D D       
Sbjct: 87  HF----LRCDVTEEEQIAKAVETAVTRHGKLDVMLNSAGISCSISPPSIADLDM------ 136

Query: 115 FLAISPDAFHRALAVSAAGAFYCAHQVIPGMVERGRGTVIFTGSSASVTGYAGYSDLSCG 174
                 D + + + ++  G           M+  G G+++   S + + G  G    S  
Sbjct: 137 ------DTYDKVMRLNVRGTVLGIKHAARAMIPAGSGSILCLSSISGLMGGLGPHAYSIS 190

Query: 175 KFALRGLSQSLAKEFQPAGVHI 196
           KF + G+ +++A E    G+ I
Sbjct: 191 KFTIPGVVKTVASELCKHGLRI 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,315,399
Number of extensions: 212816
Number of successful extensions: 605
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 8
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)