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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0457100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.0516) R2 : 0.196
β1 : -1.15 (0.206) R2dD : 0.069 R2D : -0.0281
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.931 (0.121) R2dE : 0.106 R2E : 0.0703
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.16 (0.747) R2dD*E : 0.103 R2D*E : 0.0115
γ1 : -0.452 (0.111) R2dN8 : 0.0393 R2N8 : -0.00144
σ : 0.96
deviance : 425.13
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.1
memory length : 277
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3
open length of G : 0.917

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.47 0.962 3.89 -1.18 0.372 0.743 0.637 -5.42 -0.442 7.22 20 273 3.06 0.924
456.77 0.995 3.81 -0.437 0.398 0.551 -1.31 -- -0.226 6.24 18.1 290 3.24 0.768
420.22 0.955 3.89 -1.14 0.395 0.719 -- -5.12 -0.438 6.71 20 271 3.05 0.933
461.65 1 3.85 -0.568 0.292 0.715 -- -- -0.305 6.49 18.05 277 3.45 0.933
425.13 0.96 3.9 -1.15 -- 0.931 -- -5.16 -0.452 -- 20.1 277 3 0.917
473.29 1.02 3.84 -0.536 0.858 -- -1.7 -- -0.301 5.81 -- -- -- --
479.79 1.03 3.84 -0.545 0.855 -- -- -- -0.293 6.23 -- -- -- --
463.32 1 3.86 -0.58 -- 0.874 -- -- -0.304 -- 13.25 276 3.48 0.833
470.76 1.01 3.84 -- 0.292 0.708 -- -- -0.252 7.14 18.01 275 3.45 0.933
517.67 1.06 3.85 -0.522 -- -- -- -- -0.274 -- -- -- -- --
487.62 1.03 3.82 -- 0.847 -- -- -- -0.232 6.27 -- -- -- --
471.73 1.01 3.85 -- -- 0.887 -- -- -0.249 -- 16.7 270 3.47 1.02
524.85 1.07 3.84 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 419.66 temperature 20 270 > th dose independent rect. 3 1
2 425.31 temperature 20 30 > th dose independent rect. 3 4
7 430.11 humidity 80 90 > th dose dependent rect. 3 6
11 431.91 humidity 60 30 > th dose dependent rect. 15 17
13 432.09 humidity 50 10 > th dose dependent rect. 18 14
26 434.14 humidity 80 90 > th dose dependent rect. 5 4
33 434.52 humidity 60 30 > th dose dependent rect. 12 20
35 435.03 humidity 80 270 > th dose dependent rect. 1 7
40 435.34 humidity 80 10 > th dose independent rect. 4 5
44 435.52 humidity 80 90 > th dose independent rect. 3 6
69 437.18 temperature 20 10 > th dose independent rect. 1 7
70 437.18 radiation 20 90 < th dose dependent rect. 14 18
101 438.62 radiation 20 10 < th dose independent rect. 18 14
109 438.82 atmosphere 1000 10 > th dose independent rect. 18 14
115 439.20 temperature 15 270 > th dose dependent rect. 3 1
141 439.99 humidity 80 90 > th dose dependent sin 5 NA
143 440.11 atmosphere 1010 270 < th dose dependent rect. 1 6
188 440.90 temperature 20 1440 < th dose independent rect. 1 2
201 441.10 temperature 20 1440 > th dose independent rect. 24 3
209 441.19 radiation 10 90 < th dose independent rect. 14 18
213 441.27 wind 1 90 > th dose independent rect. 7 21
250 441.72 radiation 1 270 < th dose dependent rect. 3 13
271 442.00 wind 1 270 > th dose independent rect. 5 22
286 442.24 humidity 90 270 < th dose dependent rect. 22 11
302 442.41 radiation 10 90 < th dose dependent rect. 5 3
305 442.44 wind 7 4320 < th dose independent rect. 18 1
318 442.56 temperature 15 90 > th dose dependent rect. 3 4
329 442.64 wind 7 4320 > th dose independent rect. 18 1
347 442.81 radiation 1 270 < th dose dependent rect. 3 5
353 442.88 temperature 20 1440 < th dose independent rect. 22 9
358 442.95 wind 7 4320 > th dose dependent rect. 18 1
371 443.07 radiation 20 10 < th dose independent rect. 3 5
372 443.08 radiation 1 270 < th dose independent rect. 3 13
373 443.08 humidity 70 10 > th dose independent rect. 18 14
377 443.11 atmosphere 995 10 > th dose independent rect. 8 10
389 443.24 temperature 30 10 < th dose independent rect. 8 10
415 443.40 humidity 80 270 > th dose dependent rect. 3 1
422 443.45 temperature 20 1440 > th dose independent rect. 22 9
425 443.46 radiation 30 30 < th dose dependent rect. 5 3
443 443.58 humidity 80 90 > th dose dependent rect. 3 17
452 443.66 temperature 30 10 < th dose independent rect. 8 19
455 443.67 humidity 70 30 > th dose independent rect. 14 18
460 443.71 temperature 15 10 > th dose dependent rect. 3 5
504 443.97 radiation 40 10 < th dose dependent rect. 18 14
508 443.99 humidity 90 14400 > th dose independent rect. 22 1
516 444.04 radiation 20 10 < th dose independent rect. 14 18
520 444.07 radiation 10 1440 < th dose dependent rect. 8 8
535 444.12 wind 3 10 < th dose dependent rect. 3 5
544 444.15 radiation 20 90 < th dose dependent rect. 3 5
548 444.18 radiation 1 270 < th dose independent rect. 2 6
559 444.28 temperature 30 10 < th dose independent rect. 8 21
560 444.30 wind 9 14400 < th dose independent rect. 5 4
581 444.40 radiation 1 270 < th dose independent rect. 3 4
585 444.42 radiation 30 30 < th dose independent rect. 5 3
606 444.52 atmosphere 1010 270 < th dose dependent rect. 3 3
650 444.79 humidity 80 30 > th dose dependent rect. 5 15
653 444.81 humidity 90 14400 < th dose independent rect. 22 1
682 444.98 radiation 20 1440 < th dose dependent rect. 11 1
683 444.99 wind 3 43200 > th dose independent rect. 19 1
688 445.01 humidity 90 14400 > th dose independent rect. 21 3
694 445.04 humidity 90 270 < th dose independent sin 7 NA
706 445.12 radiation 1 90 > th dose independent rect. 7 10
711 445.14 humidity 80 10 > th dose independent rect. 5 15
713 445.15 humidity 90 270 < th dose independent rect. 3 6
733 445.23 temperature 20 1440 < th dose independent rect. 6 1
736 445.25 temperature 20 720 > th dose independent rect. 19 11
763 445.34 radiation 20 1440 < th dose dependent rect. 11 5
771 445.41 radiation 1 270 > th dose independent sin 3 NA
798 445.58 humidity 90 30 < th dose independent rect. 7 5
800 445.58 temperature 10 720 > th dose dependent rect. 18 12
802 445.58 humidity 80 90 > th dose dependent rect. 23 21
808 445.62 temperature 20 1440 > th dose independent rect. 6 1
834 445.72 radiation 20 1440 < th dose independent rect. 11 5
835 445.72 humidity 90 90 < th dose independent rect. 24 12
866 445.86 radiation 10 4320 < th dose dependent rect. 21 8
867 445.87 humidity 90 14400 > th dose independent rect. 11 19
868 445.88 humidity 90 270 < th dose independent rect. 22 11
885 445.93 radiation 20 1440 < th dose dependent rect. 11 3
891 445.95 humidity 90 14400 > th dose independent rect. 21 19
897 445.96 atmosphere 995 90 > th dose independent rect. 7 22
914 446.01 humidity 90 14400 > th dose independent rect. 12 16
928 446.04 humidity 80 270 > th dose dependent rect. 23 18
943 446.11 radiation 20 1440 < th dose independent rect. 11 2
945 446.11 humidity 70 30 > th dose independent rect. 12 20
964 446.16 radiation 1 270 < th dose independent sin 4 NA
995 446.27 atmosphere 1000 30 > th dose independent rect. 3 5