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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0454500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0249) R2 : 0.00227
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0533 (0.0523) R2dN8 : 0.00293 R2N8 : 0.00227
σ : 0.468
deviance : 100.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.09 0.404 2.94 -0.00313 0.0312 12.3 -0.122 27.7 -0.0463 16.2 60 95 8.95 0.912
91.15 0.445 2.91 0.0522 0.0147 1.88 -0.293 -- -0.0229 16.6 66 125 8.53 1.58
74.11 0.401 2.94 -0.00473 0.0366 12.3 -- 27.7 -0.0471 18.2 59.98 95 8.95 0.907
85.48 0.431 2.93 0.0298 0.0348 2.79 -- -- -0.0823 19.3 64.39 53 8.17 1.13
74.18 0.401 2.94 -0.00581 -- 12.3 -- 27.7 -0.0477 -- 60 95 8.95 0.904
100.4 0.47 2.92 -0.00693 0.00348 -- -0.273 -- -0.0528 19.1 -- -- -- --
100.52 0.47 2.92 -3.56e-05 0.0358 -- -- -- -0.0526 13.7 -- -- -- --
85.26 0.43 2.92 0.0147 -- 2.59 -- -- -0.0412 -- 64.22 53 8.13 1.18
85.15 0.43 2.92 -- 0.042 2.63 -- -- -0.0539 19.3 64.6 53 8.15 1.18
100.6 0.469 2.92 -0.00149 -- -- -- -- -0.0534 -- -- -- -- --
100.52 0.469 2.92 -- 0.0358 -- -- -- -0.0526 13.7 -- -- -- --
85.22 0.43 2.92 -- -- 2.6 -- -- -0.0355 -- 64.02 51 8.15 1.2
100.6 0.468 2.92 -- -- -- -- -- -0.0533 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.75 humidity 60 90 < th dose dependent rect. 9 1
16 75.35 humidity 60 90 < th dose independent rect. 9 1
91 88.98 radiation 30 90 > th dose independent rect. 8 1
108 89.49 radiation 40 10 > th dose independent rect. 9 1
209 90.02 temperature 25 90 > th dose independent rect. 8 2
224 90.41 radiation 40 10 > th dose independent sin 11 NA
227 90.67 radiation 40 10 < th dose independent sin 11 NA
242 91.51 radiation 40 720 < th dose independent rect. 8 1
251 91.59 radiation 40 720 < th dose independent rect. 17 16
262 91.79 radiation 20 90 > th dose dependent rect. 8 1
318 91.96 wind 1 1440 < th dose dependent rect. 15 6
325 92.01 wind 1 1440 < th dose dependent rect. 15 4
354 92.17 wind 1 1440 < th dose independent rect. 16 3
355 92.17 wind 1 1440 > th dose independent rect. 15 4
356 92.17 wind 1 1440 > th dose independent rect. 15 6
359 92.17 radiation 20 270 > th dose dependent rect. 16 17
395 92.22 wind 1 1440 < th dose independent rect. 15 6
445 92.41 wind 1 1440 < th dose dependent rect. 16 1
447 92.43 wind 1 1440 < th dose independent rect. 12 9
451 92.45 wind 1 1440 < th dose dependent rect. 18 1
472 92.49 wind 1 1440 < th dose independent rect. 13 6
483 92.52 wind 1 1440 < th dose independent rect. 16 1
487 92.54 wind 1 1440 < th dose independent rect. 18 1
514 92.67 wind 1 1440 > th dose independent rect. 18 1
550 92.80 wind 1 1440 > th dose independent rect. 16 1
560 92.83 radiation 20 10 > th dose dependent rect. 9 2
582 92.97 wind 1 1440 < th dose independent rect. 12 1
611 93.02 wind 1 1440 < th dose dependent rect. 12 1
615 93.04 radiation 40 720 < th dose independent rect. 23 10
630 93.11 wind 1 1440 > th dose independent rect. 12 1