Os08g0442300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcineurin-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0442300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Calcineurin-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.02 | 0.149 | 9.51 | -0.212 | 0.52 | -0.133 | -0.2 | -0.418 | -0.063 | 1.97 | 1010 | 9047 | -- | -- |
| 10.32 | 0.15 | 9.53 | -0.327 | 0.532 | -0.121 | -0.168 | -- | -0.0993 | 1.97 | 1010 | 14085 | -- | -- |
| 10.17 | 0.149 | 9.51 | -0.203 | 0.518 | -0.134 | -- | -0.416 | -0.0628 | 1.95 | 1010 | 9163 | -- | -- |
| 10.42 | 0.15 | 9.53 | -0.316 | 0.521 | -0.132 | -- | -- | -0.0916 | 1.92 | 1011 | 16588 | -- | -- |
| 26.35 | 0.239 | 9.51 | -0.176 | -- | -0.144 | -- | -0.424 | -0.0488 | -- | 1010 | 9701 | -- | -- |
| 10.91 | 0.155 | 9.52 | -0.298 | 0.528 | -- | -0.177 | -- | -0.0595 | 1.98 | -- | -- | -- | -- |
| 11.03 | 0.156 | 9.52 | -0.292 | 0.528 | -- | -- | -- | -0.0584 | 1.96 | -- | -- | -- | -- |
| 26.86 | 0.241 | 9.52 | -0.345 | -- | -0.165 | -- | -- | -0.09 | -- | 1011 | 22667 | -- | -- |
| 12.96 | 0.168 | 9.5 | -- | 0.527 | 0.0856 | -- | -- | 0.00719 | 1.88 | 1010 | 47520 | -- | -- |
| 27.8 | 0.246 | 9.51 | -0.27 | -- | -- | -- | -- | -0.0461 | -- | -- | -- | -- | -- |
| 13.28 | 0.17 | 9.51 | -- | 0.522 | -- | -- | -- | -0.0259 | 1.95 | -- | -- | -- | -- |
| 29.49 | 0.254 | 9.51 | -- | -- | -0.101 | -- | -- | -0.0232 | -- | 1010 | 47520 | -- | -- |
| 29.73 | 0.255 | 9.51 | -- | -- | -- | -- | -- | -0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.44 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 9 |
| 11 | 9.70 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 13 | 9.73 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 10 |
| 15 | 9.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 18 | 9.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 10 |
| 34 | 9.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 11 |
| 41 | 9.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 47 | 9.81 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 57 | 9.83 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 60 | 9.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 64 | 9.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 65 | 9.83 | radiation | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 73 | 9.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 74 | 9.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 107 | 9.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 139 | 9.86 | humidity | 80 | 43200 | > th | dose independent | sin | 17 | NA |
| 140 | 9.86 | radiation | 40 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 168 | 9.86 | radiation | 1 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 186 | 9.87 | humidity | 80 | 43200 | < th | dose independent | sin | 17 | NA |
| 197 | 9.87 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 11 |
| 200 | 9.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 209 | 9.87 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 15 |
| 229 | 9.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 239 | 9.88 | radiation | 40 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 270 | 9.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 21 |
| 273 | 9.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 22 |
| 294 | 9.89 | radiation | 20 | 14400 | > th | dose independent | sin | 9 | NA |
| 308 | 9.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 316 | 9.89 | radiation | 30 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 401 | 9.90 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 8 |
| 448 | 9.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 20 |
| 453 | 9.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 21 |
| 480 | 9.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 489 | 9.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 612 | 9.91 | radiation | 20 | 14400 | < th | dose dependent | sin | 7 | NA |
| 680 | 9.91 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 727 | 9.91 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 19 |
| 735 | 9.92 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 737 | 9.92 | radiation | 20 | 14400 | < th | dose independent | sin | 8 | NA |
| 739 | 9.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 802 | 9.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 828 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | sin | 4 | NA |
| 829 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 856 | 9.92 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 14 | 8 |
| 935 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 954 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | rect. | 22 | 20 |
| 959 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 963 | 9.92 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 22 |
| 996 | 9.93 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 2 |