Os08g0432600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant MuDR transposase domain containing protein.
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Os08g0432600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant MuDR transposase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.52 | 0.462 | 10.6 | -0.0948 | 0.297 | 0.943 | 0.432 | 0.612 | 0.245 | 0.124 | 24.96 | 4354 | -- | -- |
| 96.79 | 0.458 | 10.6 | 0.0576 | 0.293 | 0.978 | 0.411 | -- | 0.283 | 0.106 | 24.96 | 4353 | -- | -- |
| 97.3 | 0.459 | 10.6 | -0.103 | 0.286 | 0.937 | -- | 0.579 | 0.243 | 23.8 | 24.9 | 4419 | -- | -- |
| 97.53 | 0.46 | 10.6 | 0.0526 | 0.293 | 0.972 | -- | -- | 0.288 | 23.9 | 24.93 | 4382 | -- | -- |
| 102.17 | 0.471 | 10.6 | -0.134 | -- | 0.89 | -- | 0.706 | 0.243 | -- | 24.8 | 4553 | -- | -- |
| 120.27 | 0.514 | 10.6 | -0.309 | 0.243 | -- | 0.389 | -- | 0.104 | 23.7 | -- | -- | -- | -- |
| 120.89 | 0.515 | 10.6 | -0.324 | 0.242 | -- | -- | -- | 0.103 | 23.3 | -- | -- | -- | -- |
| 102.44 | 0.471 | 10.6 | 0.0581 | -- | 0.936 | -- | -- | 0.306 | -- | 24.79 | 4518 | -- | -- |
| 97.59 | 0.46 | 10.6 | -- | 0.295 | 0.953 | -- | -- | 0.281 | 23.9 | 24.9 | 4354 | -- | -- |
| 124.57 | 0.522 | 10.6 | -0.317 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 123.65 | 0.52 | 10.6 | -- | 0.239 | -- | -- | -- | 0.139 | 23.2 | -- | -- | -- | -- |
| 102.52 | 0.472 | 10.6 | -- | -- | 0.911 | -- | -- | 0.297 | -- | 24.8 | 4512 | -- | -- |
| 127.23 | 0.526 | 10.6 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 4 | 91.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 25 | 92.40 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 27 | 92.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 30 | 92.46 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 36 | 92.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 37 | 92.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 53 | 92.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 61 | 92.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 65 | 92.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 128 | 93.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 186 | 93.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 309 | 95.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 361 | 95.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 401 | 95.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 429 | 96.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 530 | 96.54 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 532 | 96.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 546 | 96.60 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 558 | 96.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 574 | 96.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 578 | 96.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 579 | 96.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 599 | 96.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 605 | 96.81 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 610 | 96.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 649 | 96.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 667 | 97.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 692 | 97.12 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 723 | 97.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 958 | 97.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 962 | 97.84 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 967 | 97.84 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 9 |