BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0432600 Os08g0432600|Os08g0432600
(892 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 94 5e-19
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 78 3e-14
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 77 6e-14
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 7/250 (2%)
Query: 352 MCFRGKDQLKDAIERYALKKKINIRYVKNEQKRIRAVC-RWKGCPWLLYASHNSRSDWFQ 410
+CF+ +D+LK A++ + ++++ N + E++ C RWK C W L A+ +
Sbjct: 189 LCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWK-CKWSLRAARMEEHGLVE 247
Query: 411 IVTYNPNHACCPELKNKRLSTRRICDRYESTIKANPSWKAREMKETVQEDMGVDVPITMI 470
I Y H C E N + D E ++ P+ E+K+ +E G ++ + +
Sbjct: 248 ITKYTGPHTCSHEYPND-FESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSKM 306
Query: 471 KRAKAHVMKKIMDTQTGEYSKLFDYALELQRSNPGTSVHVALD--PEEEDHVFQRFYVCF 528
+ K V+K++ + + + SN G V D P + F+ + F
Sbjct: 307 RDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFASFRGVFWSF 365
Query: 529 DACRRGFLEGCRRIIGLDGCFLKGPLKGELLSAIGRDANNQLYPIAWAVVEYENKDSWNW 588
GF + CR +I +D L G + +L+ A G DA N+ +P+A+AV + + DSW W
Sbjct: 366 SQSIEGF-QHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRW 424
Query: 589 FLGHLQKDIN 598
F +++ +
Sbjct: 425 FFTKIREKVT 434
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 625 KKWRFTVDLTSKTCSCRYWQVSGIPCQHACAALFKMAQEPNNCIHECFSLERYKKTYQHV 684
+K + V L TC+CR +Q PC HA A K+ P + EC+++E+Y KTY
Sbjct: 630 EKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAAT 689
Query: 685 LQPVEHESAWPVSPN-PKPLPPRVKKMPG 712
PV +AWP P PP + P
Sbjct: 690 FSPVPDVAAWPEDCRVPTLFPPSQQLSPN 718
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 15/264 (5%)
Query: 342 FADTPQFAVDMCFRGKDQLKDAIERYALK--KKINIRYVKNEQKRIRAVCRWKGCPWLLY 399
+ D V +CF+ D+LK A++ +LK +K +R ++ + RWK C W L
Sbjct: 186 WLDDHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECI-RWK-CKWSLG 243
Query: 400 ASHNSRSDWFQIVTYNPNHACCPELKNKRLSTRRICDRYESTIKANPSWKAREMKETVQE 459
A+ + +I+ Y H C P + + + D E ++ P+ E+K+ ++
Sbjct: 244 AARMKKHGLVEIIKYTGPHTCHP-IVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKK 302
Query: 460 DMGVDVPITMIKRAKAHVMKKIMDTQTGEYSKLFDYALELQR---SNPGTSVHVALD--P 514
+G ++ + ++ AK +K++ G++ + F+ +L S+ G V D P
Sbjct: 303 KIGYELETSDVRLAKEKAIKRVF----GDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFP 358
Query: 515 EEEDHVFQRFYVCFDACRRGFLEGCRRIIGLDGCFLKGPLKGELLSAIGRDANNQLYPIA 574
F + F GF + CR +I +D L + +L+ A G DA N+ +P+A
Sbjct: 359 NPNFASFCGVFWAFPQSIEGF-QHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLA 417
Query: 575 WAVVEYENKDSWNWFLGHLQKDIN 598
+AV + + D W WFL +++ +
Sbjct: 418 FAVTKEVSTDIWRWFLTGIREKVT 441
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 631 VDLTSKTCSCRYWQVSGIPCQHACAALFKMAQEPNNCIHECFSLERYKKTYQHVLQPVEH 690
V L+ +C+C +Q PC HA A K+ P + +C++LER K+TY + V
Sbjct: 645 VQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPE 704
Query: 691 ESAWP 695
SAWP
Sbjct: 705 MSAWP 709
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 13/259 (5%)
Query: 350 VDMCFRGKDQLKDAIERYALKKKINIRYVKNEQKRIRAVCRWKGCPWLLYASHNSRSDWF 409
V +CF+ ++K A++ ++K++ + E+ C C W + AS F
Sbjct: 182 VGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLF 241
Query: 410 QIVTYNPNHACCPELKNKRLSTRRICDRYESTIKANPSWKAREMKETVQEDMGVDVPIT- 468
+I + H C PE N I + E ++ P+ E+ + ++ G +
Sbjct: 242 EITECSGPHDCYPEHLND-FDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVV 300
Query: 469 ------MIKRAKAHVMKKIMDTQTGEYSKLFDYALELQRSNPGTSV---HVALDPEEEDH 519
+++ AK +K+ + +L + + S+ G V + +L + E
Sbjct: 301 EHCSEGLVEDAKVKAIKRFFGDWDQSF-RLIPKLMSVLHSSNGLLVDWQYDSLTHDPEHA 359
Query: 520 VFQRFYVCFDACRRGFLEGCRRIIGLDGCFLKGPLKGELLSAIGRDANNQLYPIAWAVVE 579
F+ + F +GF + CR +I +D L G K +L+ A DA NQ +P+A+AV +
Sbjct: 360 SFRGLFWAFSQSIQGF-QHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTK 418
Query: 580 YENKDSWNWFLGHLQKDIN 598
+ DSW WFL +++ +
Sbjct: 419 EVSVDSWRWFLTRIREKVT 437
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 631 VDLTSKTCSCRYWQVSGIPCQHACAALFKMAQEPNNCIHECFSLERYKKTYQHVLQPVEH 690
V L TC+C +Q + PC HA A ++ P + +C+++ERY KTY PV
Sbjct: 652 VQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPVPE 711
Query: 691 ESAWP 695
SAWP
Sbjct: 712 LSAWP 716
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,563,089
Number of extensions: 852056
Number of successful extensions: 2787
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2784
Number of HSP's successfully gapped: 6
Length of query: 892
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 785
Effective length of database: 8,173,057
Effective search space: 6415849745
Effective search space used: 6415849745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)