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Os08g0424200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.09 | 0.336 | 9.65 | -0.357 | 0.287 | 2.17 | 0.386 | -0.263 | -0.322 | 10.5 | 9.433 | 460 | -- | -- |
| 51.13 | 0.333 | 9.65 | -0.315 | 0.281 | 2.17 | 0.406 | -- | -0.311 | 10.4 | 9.461 | 454 | -- | -- |
| 51.67 | 0.335 | 9.66 | -0.366 | 0.28 | 2.18 | -- | -0.411 | -0.329 | 10.3 | 9.209 | 454 | -- | -- |
| 51.79 | 0.335 | 9.65 | -0.298 | 0.276 | 2.17 | -- | -- | -0.31 | 10.2 | 9.163 | 450 | -- | -- |
| 54.43 | 0.344 | 9.65 | -0.299 | -- | 2.08 | -- | -0.227 | -0.297 | -- | 10.05 | 346 | -- | -- |
| 103.85 | 0.478 | 9.59 | 0.181 | 0.513 | -- | 0.549 | -- | 0.00733 | 16.3 | -- | -- | -- | -- |
| 104.68 | 0.479 | 9.59 | 0.186 | 0.518 | -- | -- | -- | 0.0103 | 16.4 | -- | -- | -- | -- |
| 54.46 | 0.344 | 9.65 | -0.265 | -- | 2.08 | -- | -- | -0.289 | -- | 13.26 | 346 | -- | -- |
| 53.97 | 0.342 | 9.65 | -- | 0.251 | 2.08 | -- | -- | -0.284 | 10.2 | 8.747 | 429 | -- | -- |
| 119.05 | 0.51 | 9.59 | 0.166 | -- | -- | -- | -- | -0.00339 | -- | -- | -- | -- | -- |
| 105.59 | 0.481 | 9.59 | -- | 0.514 | -- | -- | -- | -0.0105 | 16.4 | -- | -- | -- | -- |
| 56.17 | 0.349 | 9.64 | -- | -- | 1.99 | -- | -- | -0.249 | -- | 12.55 | 339 | -- | -- |
| 119.78 | 0.511 | 9.59 | -- | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 14 | 48.00 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 21 | 48.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 98 | 50.02 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 199 | 51.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 237 | 52.47 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 264 | 52.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 268 | 52.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 333 | 53.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 386 | 53.97 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 430 | 54.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 487 | 54.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 505 | 55.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 515 | 55.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 695 | 56.49 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 725 | 56.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 754 | 56.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 756 | 56.77 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 821 | 57.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 829 | 57.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 881 | 57.24 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
