BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0424200 Os08g0424200|AK060716
         (310 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34030.1  | chr4:16301298-16303949 FORWARD LENGTH=588          478   e-135

>AT4G34030.1 | chr4:16301298-16303949 FORWARD LENGTH=588
          Length = 587

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/313 (72%), Positives = 260/313 (83%), Gaps = 3/313 (0%)

Query: 1   AEDLGGASVHCKISGVSDHFAQDELHGLTLGRNIVKNLHLAAKVP---NVQNSACDYQEP 57
           AEDLGGA+VHC +SGVSD+FAQDELHGL +GRNIVKNLH+AAK        +    Y+EP
Sbjct: 275 AEDLGGATVHCTVSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEP 334

Query: 58  LYDVQELRSIAPADMKQSFDIRQVIARIVDGSEFDEFKKLYGTTLVTGFARICGQPVGII 117
           LYD+ ELRSIAP D KQ FD+R +IARIVDGSEFDEFKK YGTTLVTGFARI GQ VGII
Sbjct: 335 LYDINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGII 394

Query: 118 GNNGILFTESALKGSHFIELCAQRNIPLIFLQNITGFMVGSKSEASGIAKAGAKMVMAVS 177
           GNNGILF ESALKG+HFIELC+QR IPL+FLQNITGFMVGS++EA+GIAKAGAKMVMAVS
Sbjct: 395 GNNGILFNESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVS 454

Query: 178 CSKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPTARISVMGGIQAAGVLAQIEKNNR 237
           C+KVPKITII G SFGAGNY MCGRAYSP+F+F+WP ARI +MGG QAAGVL QIE+  +
Sbjct: 455 CAKVPKITIITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATK 514

Query: 238 KRQGVEWTKDXXXXXXXXXXXXYDKEGSPYYSTARLWDDGIIDPADTRRVLSLCLSAAAK 297
           KRQG++WT++            Y++E +PYYSTARLWDDG+IDP DTR+VL LCLSAA  
Sbjct: 515 KRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALN 574

Query: 298 PVPEDTKYGVFRM 310
              EDT++GVFRM
Sbjct: 575 RPLEDTRFGVFRM 587



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,466,558
Number of extensions: 254721
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)